Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-FoxD-LacZ

Short name

n/a

Region ID

REG00000385

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

no_output

Author

Fujiwara team (2008-03-09)

Annotator

Émilie Carmona (2008-03-09)

Curator

Émilie Carmona (2008-03-09)

View position in WashU

Description

Hierarchy of Regulatory Regions

Ci-FoxD-LacZ REG00000385 [ no_output ]

Regulated gene(s)

KH2012:KH.C8.890 (FOXD1; FOXD3; FOXD4)

Construct(s) made to test this region

n/a

Overview of functional TF binding sites in this region

2,621,7472,621,926

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [2,621,747 / 2,621,926] on scaffold KhC8

Show sequence

Length: 180

AAAGTTTAATTTCATTAAAG---ATGTTAGTTCG-----------------ACTTTAATC
GTAGCTTAGTTTGACTGATGTCGCGAGCGATTAAGCGATAAGAAGGCGAGAAATATCATC
GATGTTTGTTCCCGATATTTGGCGGCGTTTGTGGC-GTTTGAAAGAGGCGAGTTCGAGTC

Reference(s)

Mita et al. (2007). Nodal regulates neural tube formation in the Ciona intestinalis embryo. Dev. Genes Evol. 217(8):593-601