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  1. Transcript 'KH2012:KH.C14.312.v3...'
  2. Clone 'cilv035n01'
  3. EST 'FF710862.1'
  4. Transcript 'Boleac.CG.SB_v3.S8.g...'
  5. Region 'REG00000410'

Cis-regulatory Region

Name

Ci-Pax6 -2500/1 delta -2200/-700

Short name

n/a

Region ID

REG00000410

Status

In Process of Manual Curation

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

no_output

Author

Steven Q. Irvine (2008-06-18)

Annotator

Émilie Carmona (2008-06-18)

Curator

Delphine Dauga (2010-02-26)


Description

This region allows expression of Ci-Pax6 in trunk mesenchyme at late stage.

Overview of functional TF binding sites in this region

5,699,9925,702,428

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,699,992 / 5,702,428] on scaffold KhC9

Sequence from JGI Version 1 thanks to coordinates in the paper. Nucleotides deleted was replaced by "-".

Show sequence

Length: 2,436

TTTAAAATATTTCGCCGAAAATGTCCAGAGACAGAAAATGTAAATTTTCCTAAATCAGAA
AAGTCCTTTATATATAACAGTATATGTCTGTCATTAAAATAATGTCAGTAAGGTTTAAAA
TTATAAGGTAAACAATTCATAAAGGCATGCAAAAATTACAAAGAATATGTCTTGGTGGTA
ATTAATATGTTTTTTTGTATATTTTTTTAAAGTAGAACGGGGGAAGACGGTACACCTTTA
CCACATAATATCTAAACTTTCTAGTTGTGTTTTTAAACAATTAACAACGGTGCATGGGAG
TCGTAAAATACGGTTTCATATTTCTTTGAATGTTCTTTGTTTACTACCAAATTGGACGAG
AAAACAGATTGAAAAGGTGTCCTATCTCCCCCCACCCTACTATATCATTTTATTTATCGT
CTGCTTGTTTTAACATATTATCCTGTTTAATTCGACCAAGGTTTATATTTCAAACATTAA
CCATCTCGGTTTTCGGTACATAACAAAAACAAGCGACGACAAAATAAAATTTCGAAGATA
TCGCGGTTTCCGAAAGCAAATTCAAAACACGAAAATCGAAGTCGGGACAACATAACATAT
G-----------------------------------------------------------
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----AAAGTAACGGCCCAGTTTGATAGAGCAACAAGCATTAAGTCCCAAGAGAGGAACTG
TGGTATATTTAGATCACTAGATTTACTTGCATTGAGAAAGCAAGACACTTAAACGCATAT
TCCTTGATGGTGTATATGGCATACCAAAGTAGAAAATACGGTACAACTCGAAAAAAAACT
ATGTTTAATATTCGGTTACGTTGCAGTATAATTTCAAGGTTTAAATTCTTTCCAGAGACA
CGCGTAATTTACATATAAAGAGGCGTATATATATATTACATACGATGCGCTTATATACAC
AAATCTGTATATAGAGAGGGCGTATAAACAAAATCAGGATTTTAAATATTTTTACATGGC
ATCACTGCTCTAAAGAATCGGTTAACAATACCTGAATAGGGAGCCCGTAATGTATTGATT
AAGACCCCGAAACAAAGCGGAGAATTAGTATTAAAA





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