Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-RORb -596bp/-329bp

Short name

n/a

Region ID

REG00000447

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Hélène Auger (2009-06-29)

Annotator

Clara Degos (2010-07-23)

Curator

Delphine Dauga (2010-04-12)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Ci-Rorb -596/113 by deletion

Ci-RORb -1649bp/4353bp REG00000445 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C8.737 (MUSK; ROR1; ROR2)

Construct(s) made to test this region

CONS00000425: pCi-RORb -596bp/-329bp::LacZ

Show in situ data

Overview of functional TF binding sites in this region

2,708,3482,708,613

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [2,708,348 / 2,708,613] on scaffold KhC8

Sequence from JGI Version 1 thanks to coordinates in the paper.

Show sequence

Length: 266

TTCCCAATTAGAACACACAGGTAGAAAAATACATTAGAATATCTTTGATTAGACTAGCAA
GATAGGCACCTAATTTCCTATGTTAGTACAACTGGTTTTATAAAATTATAAAAATTTCCT
GCTATAATCGGTTAGAGCAAGGAACGGTGATTATAAACTTGAGCCAAATTCGCTAAAAGC
AAATTGGACGTCGCCTTATCGTTGAACTAAGTCTTGGCAGAGGCCTGTATTGTGTATGGT
CACCCTGGTACAATAGATCCGAACCA

Reference(s)

Auger et al. (2009). Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5. Dev. Biol. 329(2):364-73