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  1. Clone 'cijv017n21'
  2. Clone 'AHC0AAA108YN07'
  3. Clone 'AHC0AAA55YF14'
  4. Clone 'cima876627'
  5. Region 'REG00000448'

Cis-regulatory Region

Name

Ci-Rorb -330/113

Short name

n/a

Region ID

REG00000448

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(RNApol_II_core_promoter)

Author

Hélène Auger (2009-06-29)

Annotator

Clara Degos (2010-07-23)

Curator

Delphine Dauga (2010-02-24)


Description

Transcription start site is based on the start of the first exon of the KH transcript model. Construct used to test this sequence is named BS2/3 in the paper. This construct recapitulates the endogenous expression of Ci-Rorb.

Construct(s) made to test this region

CONS00000610: pCi-Rorb -330/113::LacZ

Overview of functional TF binding sites in this region

2,707,9052,708,347

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,707,905 / 2,708,347] on scaffold KhC8

Sequence from JGI Version 1 thanks to the primers described in the paper.

Show sequence

Length: 443

ATGTGTGTTGACTTTGCAGCGCGTCTAATCGCCAATAGCGATAACGTAATGAGATCCGAC
TGCGGCTCTAATTAGCGCGGACACGGGCGAGAGATATTGCCTTTTTCCTACATTTCGTGC
CCCACTCCGTAAAAGCGTTTGCGCTTTTCTATCACTATACAGTCGAATAAGTGAAACGTG
AGCGCGGTTGCTTGTTATGACTTTCTGCTTATAATTACTACTTTAATGATTTCGAAATTA
GCTCCTTTGCCAGGAGAAGCAAGATAATTGCGTGAGATTTAAGTGTACGTCTGGTTTCCA
GTATTACACGTATGTATCCTATCTTGCAGAATATTTTAAGGAAGTATTTTAAAGTACAAG
TGTTCGGACAAGACAGAAAGTATCAAAAATCAAAGTGTTGCGGATATTGACGGAAATGAA
AAGACACCATCTGTTATGGAGTC





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