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  1. Region 'REG00000456'

Cis-regulatory Region

Name

ci0100137874 4403/4524

Short name

n/a

Region ID

REG00000456

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Pierre Khoueiry (2009-11-04)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-07-22)

View position in WashU

Description

This region does not appear to regulate ci0100137874.

Coordinates are base on JGI transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.S522.3 (KH.S522.3)

Construct(s) made to test this region

CONS00000431: ci0100137874 4403/4524 pFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

36,23836,358

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 ZnF_(GATA) n/a GATA [36,238 / 36,241]
2 Ets n/a GGAT [36,243 / 36,246]
3 Ets n/a TTCC [36,261 / 36,264]
4 Ets n/a ATCC [36,261 / 36,264]
5 ZnF_(GATA) n/a TATC [36,300 / 36,303]
6 Ets n/a ATCC [36,301 / 36,304]
7 ZnF_(GATA) n/a GATA [36,324 / 36,327]

Sequence

Aniseed Coordinates: [36,238 / 36,358] on scaffold KhS522

Sequence from JGI V1.0

Show sequence

Length: 121


GATATGGATTTGTGAGCTGTACCTTCCAAAGGCATCATCCGTCATACAGGTATATATACC
AGTATCCTCTTTTGACACAGAGGCTAGATATAACATGGGTTGTGTTCTTAAAGTATTATT
A

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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