Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-Erfa 11091/11293

Short name

n/a

Region ID

REG00000457

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Pierre Khoueiry (2009-11-04)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-06-08)

View position in WashU

Description

+1 is based on the start of the first exon of the KH transcript model

Hierarchy of Regulatory Regions

Ci-Erfa 11091/11293 REG00000457 [ regulatory_region (enhancer) ]

Regulated gene(s)

n/a

Construct(s) made to test this region

CONS00000432: Ci-Erfa 11091/11293 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

3,685,1603,685,362

	Motif Name	Binding Factor(s)	Sequence	Position in Region
1	Ets	n/a	GGAA	[3,685,184 / 3,685,187]
2	Ets	n/a	GGAA	[3,685,198 / 3,685,201]
3	ZnF_(GATA)	n/a	GATA	[3,685,214 / 3,685,217]
4	Ets	n/a	GGAA	[3,685,239 / 3,685,242]
5	Ets	n/a	TTCC	[3,685,291 / 3,685,294]
6	ZnF_(GATA)	n/a	TATC	[3,685,323 / 3,685,326]

Sequence

Aniseed Coordinates: [3,685,160 / 3,685,362] on scaffold KhC4

Sequence from JGI V1.0

Show sequence

Length: 203

CCGCCTCTCCTGCTATTGTCTTGCGGAAATGGGGTCGAGGAAAAGGGTTAGTCAGATACA
AGGCCCGATCAGCGTCCGAGGAAATCAGGTCGTCTCACGAAGCGCTCGCGCGTAACAACA
AAGGAGACGTTTTCCATCGTGCTCTTGTCCGCCGACTTCTCGCTATCACACCGTGGAGAG
AACAAAAGAGTGAATACCCACGC

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802