Login
Help

Submit your Data

  1. Region 'REG00000461'

Cis-regulatory Region

Name

ci0100150529 -1956/-1822

Short name

n/a

Region ID

REG00000461

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Pierre Khoueiry (2009-11-05)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-07-22)

View position in WashU

Description

This region does not appear to regulate ci0100150529.

Transcription start site is based on the start of the first exon of the KH transcript model

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C7.576 (SERPINB11; SERPINB6; SERPINE1)

Construct(s) made to test this region

CONS00000436: ci0100150529 -1956/-1822 pFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

20,82120,954

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Ets n/a GGAT [20,851 / 20,854]
2 ZnF_(GATA) n/a TATC [20,863 / 20,866]
3 Ets n/a ATCC [20,864 / 20,867]
4 Ets n/a GGAT [20,878 / 20,881]
5 ZnF_(GATA) n/a GATA [20,879 / 20,882]
6 Ets n/a GGAT [20,890 / 20,893]
7 ZnF_(GATA) n/a TATC [20,919 / 20,922]
8 Ets n/a ATCC [20,920 / 20,923]

Sequence

Aniseed Coordinates: [20,821 / 20,954] on scaffold KhC2

Sequence from JGI V1.0

Show sequence

Length: 134


GGTGAGAGAGGCGTTGATTGGTTAAGTGGTGGATGAGAGCTATATCCTTCTTATACAGGA
TAAGTGTTAGGATTCAGTAGCTACTAATTTCACACTTGTATCCTCAATTTAATACCCGGG
CAATTGCTCGTATC

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

Back to Top





By clicking "SEND", you accept the terms of our Privacy Policy.

You may choose to prevent this website from aggregating and analyzing the actions you take here. Doing so will protect your privacy, but will also prevent the owner from learning from your actions and creating a better experience for you and other users.