Description

- Transcription start site is based on the start of the first exon of the KH transcript model

- There are two transcript models : the transcription start site considered corresponds to the longest transcript.

- If we consider the closest transcript, the coordinates are: -1070 bp -947 bp

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C2.380 (LARP4; LARP6; LARP7)

Construct(s) made to test this region

CONS00000437: Titin 7335/7458 pFOG::LacZ

Overview of functional TF binding sites in this region

6,307,0116,307,133

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment
1	Ets	n/a	GGAT	[6,307,038 / 6,307,041]
2	ZnF_(GATA)	n/a	GATA	[6,307,039 / 6,307,042]
3	Ets	n/a	GGAT	[6,307,052 / 6,307,055]
4	ZnF_(GATA)	n/a	GATA	[6,307,053 / 6,307,056]
5	Ets	n/a	GGAT	[6,307,070 / 6,307,073]
6	ZnF_(GATA)	n/a	GATA	[6,307,071 / 6,307,074]
7	ZnF_(GATA)	n/a	TATC	[6,307,100 / 6,307,103]

Sequence

Aniseed Coordinates: [6,307,011 / 6,307,133] on scaffold KhC9

Sequence from JGI V1.0

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802