Description

This region does not appear to regulate ci0100149039.
- Transcription start site is based on the start of the first exon of the KH transcript model (No KH transcript model available)

- The KH transcript model covers two JGI models for ci0100148455 and ci0100149039

- This region corresponds to a coding region according to the KH transcript models. It was initially identified as non coding region according to the JGI transcript models.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.L96.100 (NWD1; NWD2; TEP1)

Construct(s) made to test this region

CONS00000438: ci0100149039 3158/3290 pFOG::LacZ

Overview of functional TF binding sites in this region

760,687760,818

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment
1	Ets	n/a	GGAA	[760,724 / 760,727]
2	Ets	n/a	GGAT	[760,730 / 760,733]
3	ZnF_(GATA)	n/a	TATC	[760,737 / 760,740]
4	Ets	n/a	ATCC	[760,763 / 760,766]
5	ZnF_(GATA)	n/a	TATC	[760,764 / 760,767]
6	Ets	n/a	TTCC	[760,770 / 760,773]
7	Ets	n/a	GGAA	[760,784 / 760,787]
8	Ets	n/a	ATCC	[760,796 / 760,799]
9	ZnF_(GATA)	n/a	GATA	[760,815 / 760,818]

Sequence

Aniseed Coordinates: [760,687 / 760,818] on scaffold KhL96

Sequence from JGI V1.0

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802