Description

This region does not appear to regulate myocardin.

- Transcription start site is based on the start of the first exon of the KH transcript model

- According to the KH transcript models, this element falls in a coding region. However, It was initially tested based on the JGI transcript models

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C3.923 (MKL1; MKL2; MYOCD)

Construct(s) made to test this region

CONS00000440: myocardin 6166/6294 pFOG::LacZ

Overview of functional TF binding sites in this region

2,362,3162,362,443

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment
1	ZnF_(GATA)	n/a	GATA	[2,362,333 / 2,362,336]
2	ZnF_(GATA)	n/a	TATC	[2,362,335 / 2,362,338]
3	Ets	n/a	ATCC	[2,362,336 / 2,362,339]
4	ZnF_(GATA)	n/a	TATC	[2,362,374 / 2,362,377]
5	ZnF_(GATA)	n/a	TATC	[2,362,382 / 2,362,385]
6	Ets	n/a	GGAA	[2,362,406 / 2,362,409]

Sequence

Aniseed Coordinates: [2,362,316 / 2,362,443] on scaffold KhC3

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802