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CIS-REGULATION

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  1. Region 'REG00000312' > 
  2. Region 'REG00000466'

Cis-regulatory Region

Name

KH2012:KH.C12.670.v1.A.ND1-1 5736/5845

Short name

n/a

Region ID

REG00000466

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Pierre Khoueiry (2009-11-05)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-07-22)

View position in WashU

Description

This region does not appear to regulate KH.C12.670.v1.A.ND1-1.

Transcription start site is based on the start of the first exon of the KH transcript model

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C12.670 (CSMD1; CSMD2; MASP1)

Construct(s) made to test this region

CONS00000441: KH.C12.670.v1.A.ND1-1 5736/5845 pFOG::LacZ

Show in situ data
Overview of functional TF binding sites in this region

3,770,1973,770,305

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Ets n/a GGAA [3,770,219 / 3,770,222]
2 Ets n/a ATCC [3,770,224 / 3,770,227]
3 Ets n/a GGAA [3,770,249 / 3,770,252]
4 ZnF_(GATA) n/a TATC [3,770,267 / 3,770,270]
5 ZnF_(GATA) n/a TATC [3,770,278 / 3,770,281]

Sequence

Aniseed Coordinates: [3,770,197 / 3,770,305] on scaffold KhC12

Sequence from JGI V1.0

Show sequence

Length: 109


TATGTTGTTCACAAACTACCTGGTTATCTTATTTCTATCAGTCCATTACTGTCGGAAAGG
CTCATATAGCTCTATGGCATCCCGGAAAAGCCTCCTGCACGGTTAAGCA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802

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