Description

This region does not appear to regulate QRICH2.

- Transcription start site is based on the start of the first exon of the KH transcript model

- Part of this region is indicated as coding according to the KH transcript models. It was initially identified as conserved non coding according to JGI transcript models.

Hierarchy of Regulatory Regions

Regulated gene(s)

n/a

Construct(s) made to test this region

CONS00000444: QRICH2 6830/6960 pFOG::LacZ

Overview of functional TF binding sites in this region

2,701,8842,702,013

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment
1	ZnF_(GATA)	n/a	GATA	[2,701,888 / 2,701,891]
2	ZnF_(GATA)	n/a	TATC	[2,701,907 / 2,701,910]
3	Ets	n/a	ATCC	[2,701,908 / 2,701,911]
4	Ets	n/a	GGAA	[2,701,921 / 2,701,924]
5	Ets	n/a	GGAT	[2,701,954 / 2,701,957]
6	ZnF_(GATA)	n/a	GATA	[2,701,955 / 2,701,958]
7	Ets	n/a	TTCC	[2,701,965 / 2,701,968]
8	Ets	n/a	GGAT	[2,701,972 / 2,701,975]
9	Ets	n/a	GGAT	[2,701,983 / 2,701,986]

Sequence

Aniseed Coordinates: [2,701,884 / 2,702,013] on scaffold KhC4

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802