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CIS-REGULATION

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  1. Region 'REG00000032' > 
  2. Region 'REG00000488'

Cis-regulatory Region

Name

Pla2g4b -1448/18

Short name

n/a

Region ID

REG00000488

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2009-12-09)

Annotator

Delphine Dauga (2010-03-01)

Curator

Delphine Dauga (2010-03-01)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.



Transcription start site is based on the start of the first exon of the KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C7.455 (JMJD4; JMJD7; KDM8)

Construct(s) made to test this region

CONS00000459: pPla2g4b -1448/18::EGFP

Show in situ data
Overview of functional TF binding sites in this region

5,914,6385,916,104

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,914,638 / 5,916,104] on scaffold KhC7

Sequence from JGI V1.0

Show sequence

Length: 1,467

TCTTGGTTAAAACTGATTCTAAGGAAATATAAAGTTAATTTAAACCATCCTCTGTGTGAT
ATCCTGTTTCAATGACGGTCGTTTCTCTACCATTATTCCTTTGCTTTTATATCATAGAAA
CAGCGAAAATAGAACTATTTAAAACAACATGGGATATGAAATTAGCAGCAAACGACAGTC
GTTAAAACATGCTATGGCTAAAAACTACTGAATGAAAGCGTGACAGTTAAACCTTAAAAA
AAAACACTAAATGAAACGGAAAATATATAAAAAATATCTTCTCAGTCAATAAAACTTAAA
CTAAATTCTAAAATCTATCCAACAATCAAGCTTTTAATAATCGATGTTTGTGTCGTCACA
AACGTCCTTTATTACGCGACGTTTATCTCAATGGGTTTTATAAAGCATTTTATTACGTCA
CAAGTGTTAGAAAAACGCGAAATATCGCGCGGTTATTATGTTTTGGAACAAGAGAGAACG
CGACGCTTATTCAAACAATTGTGACGTGAAGATCCGGGTTATGTCGTCACAGTTGGAATT
GTCCCGCTGTGTGACGTGTCCTTTCAACCCCGATTTTAATTAAATATTATTTCTATGTCA
ACCCAATATTTTTGGCTGTCCTACTTTTAATAATGACGTCATATTGTTACTACGTCATCA
CTGAGACGAACCATTGAGGACAATAACTAAAATACAGATTACAAATACGCAGTCATTCCC
GTTTATAAACAATGAAATCGCTCTGTTACGCTTTAGGAGTTAATGCGACTTGATTGGTAT
AACGTTTGGACGTGCGTCTTAGAGAACTACGTTGTCCCTGAAGCGTTAACATAGCGATTT
CAAAGTAAATGCCGTGTTGTGAAAAAAATGTGCAAAGAAAATAAAATACATTTAATAAAT
TAACGTTTCGCGTCGCTGTCTGGCTTAAACACAATGTTATATTACGCAACGCTGCGTTCC
AAAACGTGGCATCATTAAATATTAAAGTATTTAAAAAGTTTAAAAATTATAATGAATGCA
ACATATATTTAATACATGTGCAATCGAATTAAAACTTATTTCAAAAATAAAATAAAAAGT
CGCGCCCGATAAGGGACTTGAACCCTTGACCGTTGGATTAAAAGTCCAACGCTCTACCGG
CTGAGCTAACCGGGCTCGCGTCCGTCTGTGCGACGTTTACGATAATGACGTCATAAATAC
CTCGTCTGTTTTTTCTCGAATTTTCAAACATAAAGTGAAAATAGTTTATTGTTTTAGCTA
CAACAAAATAAAGGTAAAAGTGTCCACAGTTTGCTACAAGCACAATAGTAAACAAGCACA
TGTGAAATAAACAGGCATAATAACAAGCACACATAAATTGCTACAAGCACATTTTGAAAA
CAAGCACACAGTAACAAGAACCTATGCAGATATTTTTATATTTGTTGCTAGGTAACATTA
ATGACGTCATTCATTCATTATCCAACC

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

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