- Region 'REG00000541'
Cis-regulatory Region
Name
CPE -3433/-1
Short name
n/a
Region ID
REG00000541
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Kusakabe team (2009-12-12)
Annotator
Delphine Dauga (2010-01-14)
Curator
Delphine Dauga (2010-02-28)
Conversion to aniseed format of DBTGR database entry from Kusakabe team.
Transcription start site is based on the start of the first exon of the JGI transcript model.
Note that the sequence may be duplicated : the
regulated gene for this sequence in DBTGR database is ci0100149478 (scaffold 3055) and the same sequence is retrieved in the scaffold 85 (regulated gene in Aniseed -> ci0100136776).
725,522728,953
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [725,522 / 728,953] on scaffold KhC12
Sequence from JGI V1.0.
Show sequence
Length: 3,432
AAGTGCTTCAGGTAATATGGTTTTTAAACTATTGTTTTTATCTTAAGCTAGGGGAGCAAT
GAAAGCAGCAAATTTTTAATTGTATTTCTGTGAAAGCCGTAAAATATTTTGTTTAAAAGG
CAAATCTTTCAAAAAACTTGTTTTGCAAAATTATCATTGTAAACTAGTTTAAGCAACTAA
ATGACGCGCTTTTCATTTCTTAATACGATTGTTACAAACTAAAATTTACTGGAAAAGTTG
ACCAATATATACATGCTAAAAAGAAGTCTGACATTTTAAAGCTAGCTGTTATATGATTAG
TTGTATGTATACACTATACATGCACATGCATAGCTTCATGGTGCGTGCCCATAAAATAGT
TAGGGTACATGGGAAAATGTATGCAAAGTATAAATCAGGGTATAAATAACACCGACAAAA
CAGTTATAACATGTTGTTTAATTGGGTGAGGAGGTCTATCAATAAAAGGGTGACTAGGGT
TTTCAAAAGTAAAAAAACAATATCTCTGTTTAACTTCTACTCAAAATTTAAACCAAATAA
AGCAGACCCCCCAAATATTTATATCAACAATATACATATTCAGTTTAATAATCCCTAATG
TTTGTAGTCAATGTTTGGTGGAAAACATCTCATGCTTTGGCCATCGTTATAGAGATCTTC
ATTTTCCTAAAGATCATTTTCCTTGGTCTTTCCATTCTTTTGCTTTCACAACTACTATTG
TTCCACGTCATGCTCAGTAAGTTAGTGTTATGCACCGTGTTATTCAGTAAATGTTTGAAC
CAAAGTTAGAACTATGTGTCTAACTACCGCTGACCACTGCCTTCTCTACATTTTAAAACG
TTAGGCATCTATGTCGTTGCGTGTCATAATGCGCACAATTGAACACAGGATATTTAAAGC
TCACAAACTTAGAAACTTGACGTGTAAAAGCTGATGGCTGGGAGTTAGGGGTTTACTGGC
CTGGCATATTGATTTAAAACCACAAATATAAAAATGGCAAAAAGCTTTTCATATTAATTT
AATACAGACAATTCGTAAGGGGTTACAAGTTGTCTGTTTAAAATTATTGCAGAGGTTAAG
GTTTTGTGCCTCCTCGCACCTCTGTAACGGTACGCTCGTGCATAAGTCAAACCCTTGGGT
ACAAGCGGTGCCGTGCTAACTTTATAAGGAAGGTGTATAACTATAAAGAGATTGTTTTTA
AAAATTCTGAAAGCCTTGTCAGTTATGTGTTGGTCAACGACACATTTAGATGAAGTTTGT
TTGCTCAGATCATCGGGAACTAACGACGTATGAATACGTGAAGAGAAGTGAGAGAAAGAA
GAATGAGAAAAAGGCAAAAAGAGAAGAAGAGAATATTGAGAACGGAACTTTTTGTAACGA
GCCACTAGGTGTTGATAGCGAGAGCGTTGCAAACATGGATGACCCGAGGGAAATCCCAGA
CACCCCAACCGCTCACCCCTTACCCCAATCCAGCGGGGAAATCCCTAAATCGGATCTATA
CAATGGGAACGGTTTGGTGAAGAATAAGAAAGGTAGAATAGCGAGACCCCTTCCTAAGTT
TCCAACAGCTTCTCATCAATATTCTAATGATGGTTTCCTTCATGAAGCGTCCAATCAACA
CAATGTGCAGTTACCTCATTCTATATCAGATGCAAACATTACAAGCACTGAATCCTAACA
ATCCACACTGAGAGGTCACTAAGGCACTACGTTTATGCTCACTGTGACATAAGTATTATT
ATTATTATTACAAGTTAAATATACATATTGTATAAATCATCCGGTAAGGTGCCTTGTATT
TAGTGTGTATATTATTATTATGCAACAATCTTCAGTGCTTTTTACTTCAATATTTCACGC
ACTGTGTCGTAATCCACTTTGTTCAATAAATTAATCTTTTGTGAACTTTTTACTTGCGCT
GTTTATTGTGTGTATTGTGTATACACTATGTGTTTGCTCACCATGTTGTGAGACACCCAT
ATTTTAACCTGACAGCGAGCATGAGGTGTATGAATACACCATGTGTGTCTGGTGTATAAG
AAGACACCCATGTTATAACTTAACAGTGAGCATGAGGTGTATGAATACACCATGTGTGTC
TGGTGTATAAGAAGACACCCATGTTATAACTTAACAGTGAGCATGAGGTGCATGAATACA
CCATGTATGTCTGGTGTATAAGAAAACACCCATGTTATAACTCGACAGTGAGCATGAGGT
GTATGAATACACCATGTGTGTCTGGTGTATAAGAAGACACCCATGTTATAACTTAACAGT
GAGCATGAGGTGTATGAATACACCATGTGTGTCTAGTGAATAAGACTCCCTTGCTGCAAC
AGTTTAAATTTTAAAACCCCCTAGCGACTAAGGTACTTATAAAATTTAACCGGCTGGTAA
CGCTGATGCACGATTATGAATTAAGGTGCGTTTTAAATTTCTGTGTTTGTTCCAAAAACA
AACAAACTTAGCGTTAATTGCTGATACGGTTTTATAATTTTTTGAATGTTCTTTGTTTAC
TACCAAGTGGGACGAGAAAATATAATGAAAGATGTCCCATTTTCCCTCATCCTACGATAT
CGAGTTATTTATATCAGGATTAACCACACGATACATAAAGTAGAGTGGGGGAAGATGGGA
CACCTTTTAACTTTATTTTCTCGTCCCATTTAGTAATAAACAAAGAACATTCACAGAATT
ATAGAACTATATCCTCACGACTCCCATAGACCGTTGTTAATTGTTTAAAACACGATCAGG
TTATTTGGATATTATGTGCTAAAGGTGTTCCATCTCCCCCCACCCTACTATATTAGATCT
ACAAAAAACGTCATAAAGCAGAACTCTGTAACGTTAATCTGTCGCTTATTAGACGAAGTG
CGCCTTGGAAATCGTGTTTGCAGAATGGGCGGAAAAGAAAAAAGGCGAAGGCGAGTAAAT
ATTCTTGTGTTTGCATTCATTGGACAGTTCACGTTTACAGTGGAGATTGAGTTTGGAAGT
TTCTTGTATGCGGCACGGTGTAGTAGTGTTGTAGGTAGTCTCTGTGAGTATTTAGTAAAA
TGATGGAGAATCCTATACTTTGTGTATAGATAACGCCATTGTTTTTATACATCGTATACT
ATATGATTATGAATATGTTGTTTTCGAGTTTTAGACTAACAATATATTAGTGTTTTTGTA
GAAATGTTAGAAGTGTTGGAAATTATATTTTGTTGTTATAACAGGTTGTGTTTGGCTTAC
ATAATTTAGTATGTTATGTTTTGTTTAAATATTGGCGTATGTGGCTCTTTTGTAATAACA
TAAGACCAGAAAAGCATATTCTTTGTTGCCGATGTATACTGTAATCGTATAGCCATGTTA
GACCTGTATTAGGCAGTAGTCTGCCAGTTGGTCTAACCAACAAGTTAATATAATATTCTA
CGTTGGTGTTAA
