Login
Help

Submit your Data

  1. Region 'REG00000620'

Cis-regulatory Region

Name

Ci-troponin I -1433/66

Short name

n/a

Region ID

REG00000620

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Christopher D. Brown (2009-12-12)

Annotator

Clara Degos (2009-12-12)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.

Construct #1622 in the paper.

Hierarchy of Regulatory Regions

Modification of Ci-troponin I -2014/66 by deletion

Regulated gene(s)

KH2012:KH.C11.673 (TNNI1; TNNI2; TNNI3)

Construct(s) made to test this region

CONS00000590: pCi-troponin I -1433/66::LacZ

Show in situ data
Overview of functional TF binding sites in this region

1,683,7561,685,254

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a AGGTGCTT [-764 / -757]
2 bZIP n/a TGACGTCA [-755 / -748]
3 bHLH n/a CAGCTG [-742 / -737]

Sequence

Aniseed Coordinates: [1,683,756 / 1,685,254] on scaffold KhC11

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 1,499


CGTGCCAGCTTACGAGTAACCAAGTATGTTACTTCGTGGGTGATTACTTTTTTTTTATTT
GGGTTGGGGCAATTGCCGTCGAGTGTCTGGGTTGGGGCAATTGCCGTCGAGTGTCTGGGT
TGGGGCAATTGCCGTCGAGTGTCTGGGTTGGGGCAATTGCCGTCGAGTGTCTTGCTCAAG
GTCAAATAAACTCCCACAGAGCACAGGCAGCGACATAACCCCTTAATTTAGTTAGGTTAA
CTACAAGTTGCAAAATATTACCAATTTTCAATTTTAAACCTTTGAACTTTGTCTTCAATC
TTGCCCCACTTTGTAGTTTCAAATATAATATACTGATACAAAAACAAGATAAGTTTTGGA
AAATCTAATTGAAACTTATACACATTTTGCTGGTCATCTGCCGCCCCAGCAGACTATATA
GGAAATCAAATTGAATAAATCAACGCACTCAATTTTCAGCAGGACTTTACTTTTCGTGGC
GAGCAGCAAAAAGCGGATGCTAATTTCGATAATATTTGGATTTGTTTTACATTATTTAGA
AAACGGGTTTCAAATTGATAAAACTGCATATTGGTAATAATTAATGTGGAAAACTCTTAA
GAGACAACTGAGTGGCATGCAGGGCATCGCAATAACAGCGTCTGCTGCGTGTCAACTCGA
CAGCGGGGTAGGTGCTTGTGACGTCATACTGCAGCTGTTATCGCCTGAGCAGCAGTGTTC
CCCGTGATTTTTTGCTGTGATTCAAATTTATTGATTACAAATATAAAAATTATATTATAT
TATACTTAATCAATGTAAAGTATTGATATAAGCATATTTCGTTAATTTAACCGAAATTAG
CTATAGTTTAAGCAGTTTCCAGAGGTTTACATTAGTACGGCGGCAACACTCGTTCTATAT
TAAATCCAGACAACAAGAACTTCTTCTTCGTTTAGTCCTTCGATATTCTATTTAAGGGAG
CTTACAGCATCCATCCAACATCGGTAATCAAGAATCTGTTAACCTTGTTTAGTCACAGAG
AAAGGTTCATGCATTTAAGAACCCCTTAGTGAATTTAAAGAATTTTCTTGTAGAAAGGGC
CGCATAGTGGCCATGAATACTATGGTTAACTATTAGCTTAGTTGAGTTTATCATGCTCAA
TATTTTTATCATTTAGATTTTCTGAAGGGTTTAAAATTAAAAGCCTATTAAGCATATTTA
TTTAAATATAAGTTTATCCTCTCAGGGTTGTGATAGTGATAACTTATCAGGATTTATAAC
TATAGCGCAATACTGAATTTATCAAGCTGATAAGACTACCAGTACCTGCGTAAAACCTTT
AGGAAGTCTAAATAGATACTTACTCTTCAGTAACTGAATGCAACCTGTATAAACGGAATA
TTGCAGAGTTATATTTTTATCGTTTATATCCTTGTAGTTCACTAATGCATTTTCATCTTC
AGCAGTATCAATTGGTTAAGTAGGTCTTAGTTTGGCTTAGCAACACAGCAAAACAGCAC

Reference(s)

Brown et al. (2007). Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317(5844):1557-60

Back to Top





By clicking "SEND", you accept the terms of our Privacy Policy.

You may choose to prevent this website from aggregating and analyzing the actions you take here. Doing so will protect your privacy, but will also prevent the owner from learning from your actions and creating a better experience for you and other users.