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- Region 'REG00000656'
Cis-regulatory Region
Name
Ci-RhoD -1299/1049
Short name
n/a
Region ID
REG00000656
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Lionel Christiaen (2010-04-25)
Annotator
Clara Degos (2010-04-25)
Curator
Delphine Dauga (2010-05-03)
This region drives RhoD expression in TVCs, muscles and mesenchyme.
Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.
Coordinates in the paper : -1365/+982
Modification of Ci-RhoD -2606/1049 by deletion
- Ci-RhoD -3406/1048 REG00000650 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -3406/601 REG00000651 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -2606/1049 REG00000655 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1299/1049 REG00000656 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1005/1048 REG00000657 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -645/1049 REG00000658 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -441/1049 REG00000659 [ regulatory_region (extended_promoter) ]
- Ci-RhoD 228/989 REG00000660 [ regulatory_region (enhancer) ]
- Ci-RhoD 448/990 REG00000664 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 REG00000661 [ regulatory_region (enhancer) ]
- Ci-RhoD 647/989 REG00000662 [ inactive_region ]
- Ci-RhoD 565/989 FoxF1 mutated REG00000669 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2 mutated REG00000670 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF3 mutated REG00000671 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF4 mutated REG00000672 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2/3 mutated REG00000673 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2/4 mutated REG00000674 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF3/4 mutated REG00000675 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 FoxF2/3/4 mutated REG00000676 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 Ets1/2-1 mutated REG00000677 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 Ets1/2-2 mutated REG00000678 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 Ets1/2-1-2 mutated REG00000679 [ regulatory_region (enhancer) ]
- Ci-RhoD 448/835 REG00000665 [ regulatory_region (enhancer) ]
- Ci-RhoD 565/989 REG00000661 [ regulatory_region (enhancer) ]
- Ci-RhoD 228/835 REG00000666 [ inactive_region ]
- Ci-RhoD 448/990 REG00000664 [ regulatory_region (enhancer) ]
- Ci-RhoD 228/989 REG00000660 [ regulatory_region (enhancer) ]
- Ci-RhoD -441/1049 REG00000659 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -645/1049 REG00000658 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1005/1048 REG00000657 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -1299/1049 REG00000656 [ regulatory_region (extended_promoter) ]
7,847,7547,850,100
Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
---|---|---|---|---|---|
1 | Fox | n/a | TGTTTGA | [616 / 622] | |
2 | Fox | n/a | TGTTTAT | [707 / 713] | |
3 | Ets | n/a | TGGAAG | [754 / 759] | |
4 | Ets | n/a | AGGATC | [796 / 801] | |
5 | Fox | n/a | TGTTTAT | [896 / 902] | |
6 | Fox | n/a | TGTTTGT | [925 / 931] |
Aniseed Coordinates: [7,847,754 / 7,850,100] on scaffold KhC1
Transcription start site is based on the start of the first exon of the KH transcript model.
TGACTGACAAGACCACAGTTTCCTGTGAGTTGCGCGAGTCTATATACTGCGGCAAAAGAC
GTTAGAAGGCTGTGACCTGCTGGAAAGCCTTTGCCAGCTAACCTACCGTATCGTATTTAG
CGGCTAGTCTTTCAAGTCAAGTTGTACGAATCGTTTTAGTTGTATTCATACGTCGCGAGC
GGAGTTAATTATAGTGACAGATTTTTGAACTAAATGAACGTAGTTATAAATATTGTGAGT
GAAATTCAAGCAGTAAGTGTATATAGTTAGAAGCATATGAAGTCATGGTGTATACCATTT
CGCAAAGTGTTAAAGAGGACAATTCAATACAGTCAACACGGTGTATAAAGTGCCGAAGTA
TGGGTTTACACTATTTTAATATGGTTTGTGTGAGTTGTTGTACATTTAATTTTTGAAATC
AAGCTCACTGTACAGTTTGACGACTTGCGAATAGGTCGAACATGATTACATTTTAGCCAG
AATTAGTTATGAGTTTCATGGTTAATTTTACTATTTCCTAAACGCTGTCAATTTACTGTG
TATTATTAGATCTACTAGCAATAAAGTAATGCATTGCACGAGGGTTTAGTAACAAAAGCA
TGTTAATAACCGGGTTATAAATAACTCAGAACGTTTCGAAAATCGACATAGTGACTGGCC
TACTATATCACCGAAGACGTAATAGACTATATATGCATAACACGCACATGCTTTGCGCCA
TGTATATATATGATATTTGAATATAGATTTGATCACGCCGAAAGCTGTCCAGACTAAGAA
TGCTTACAAAGGTAAGTTTCAGACAGTTCTATAAAGTTACACCAGCGTTATACAAAGGAT
CTGTATGGCAACGTCAGACAATTTGCGTAACAGGAAGCAGAACTACTTGTTTCTAACGTC
ACAGTCCCCTAGCGGCCTAGTGAATAACGGTGGCGAAAGATAGATAGTAAGTTTTTTTTA
TTGTTTTATGTCCTTGGAGAGGTAAATAAATTAACTAGGAGATGATTGAAAAAACATTAT
TACGTCCACAATATGAGTATAGTATAGCATTGTAAGGTTGTATGTTTGAGTAAGACTATC
TAAAAAAGATAAAAAAGAGATGAAGTCTAGGATTTGTTTTTCTTTTTACAGCATTGTCGT
TCAATTACCGCGTATATATGTATTTGTATTTTTAAAATTTAGCGTATATTTAGCTGCATT
TAAAGATAAAATGGGCTACTAAAGAATCCTCCCCAACTAACTGCTAGTCTAAATAGTATT
CTTCACTACTGTAACAAAGTTGCATTTCTTCTTTTAGTGACTGGCATCACTTCTTAGAAT
GTAGTTGCTAATTTTAACTTGTAAAGCCAAAACTATACACAAACAATGGAAAGGATACCC
AATGACGTCAAAGGTGCTTTCCCCGAGCAGCAACCCAAAATTAAATGTGTTATAGTTGGG
GATGGTGGATGCGGTAAAACTTCAATGCTGGTTGTATATACGGAAGGCGAATTCCCTGAA
GTAAGTTTACGTTTAATTATAAACTTTTTTGTATAGTTGTCAGTTTCAATACAAATATAG
TGGGATGGGGAAAGATGGGACAACTTTAACACCTAATATCCAAATATTCTGGTGGTGTTT
TAAAGAATAAACAATGGTCTACGCCCTACGGGGTCGTAAGGATACGGTTTTATGATTCTT
TGTATGTTCTTTGTTTACTACCAAATGGGACGAGAAAATCGAATGAAAAGGTGTCCCATC
TCCCCCCACCATACTATATATGACAGTCCGTATATATACTAGGGCGAGCAGGATAATTGG
ATAATATGTGCTAAAGGAATCCCATATCTTCCTTAACAGTACTATTTGGTATAGTTTGCT
TATACTAAATTTAATTAGCAACCCGCTGTTGTTCAAAGGTGTACACGCCCACGGTGTTTG
AGAATTACAGCAGAGAGGTGGAATTAAATCGAAAGAAGGCGGTGCTAACATTGTGGGATA
CGGCGGGTATATATTAGTACATACGTGTTTATGCAAGACATCGTAGGCTTGTTGACTTAG
TTTCGGTTAGCATGGAAGTGTAGTCTATGTTCTACGTGGGTTATGTTCTTGTCGAGGATC
TGGGATTAGGGCTAAATTCAGCCTATTATTACCACAACATTCAGACTGCTTTTGTAGGTC
CAAATGTAACATATGACTAGTGTGTTCTGATGTGTGTTTATAATACAATAAACTAGCGCA
AACTGTTTGTCCCATTATGTTTAGTCATATAGGTCATATGAGAGTAAATGAAGTGTAAAC
CAAATGTTTACTTGTACCAGGTCAGGAAGATTATGACCGGCTTCGACCTCTCTCTTACAA
CAACGCA