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  1. Clone 'cien27634'
  2. Clone 'CCAO3179'
  3. Clone 'BW572113'
  4. Clone 'cien88658'
  5. Region 'REG00000656'

Cis-regulatory Region

Name

Ci-RhoD -1299/1049

Short name

n/a

Region ID

REG00000656

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Lionel Christiaen (2010-04-25)

Annotator

Clara Degos (2010-04-25)

Curator

Delphine Dauga (2010-05-03)


Description

This region drives RhoD expression in TVCs, muscles and mesenchyme.



Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.

Coordinates in the paper : -1365/+982

Hierarchy of Regulatory Regions

Modification of Ci-RhoD -2606/1049 by deletion

Construct(s) made to test this region

CONS00000626: pCi-RhoD -1299/1049::LacZ

Overview of functional TF binding sites in this region

7,847,7547,850,100

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Fox n/a TGTTTGA [616 / 622]
2 Fox n/a TGTTTAT [707 / 713]
3 Ets n/a TGGAAG [754 / 759]
4 Ets n/a AGGATC [796 / 801]
5 Fox n/a TGTTTAT [896 / 902]
6 Fox n/a TGTTTGT [925 / 931]

Sequence

Aniseed Coordinates: [7,847,754 / 7,850,100] on scaffold KhC1

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 2,347


TGACTGACAAGACCACAGTTTCCTGTGAGTTGCGCGAGTCTATATACTGCGGCAAAAGAC
GTTAGAAGGCTGTGACCTGCTGGAAAGCCTTTGCCAGCTAACCTACCGTATCGTATTTAG
CGGCTAGTCTTTCAAGTCAAGTTGTACGAATCGTTTTAGTTGTATTCATACGTCGCGAGC
GGAGTTAATTATAGTGACAGATTTTTGAACTAAATGAACGTAGTTATAAATATTGTGAGT
GAAATTCAAGCAGTAAGTGTATATAGTTAGAAGCATATGAAGTCATGGTGTATACCATTT
CGCAAAGTGTTAAAGAGGACAATTCAATACAGTCAACACGGTGTATAAAGTGCCGAAGTA
TGGGTTTACACTATTTTAATATGGTTTGTGTGAGTTGTTGTACATTTAATTTTTGAAATC
AAGCTCACTGTACAGTTTGACGACTTGCGAATAGGTCGAACATGATTACATTTTAGCCAG
AATTAGTTATGAGTTTCATGGTTAATTTTACTATTTCCTAAACGCTGTCAATTTACTGTG
TATTATTAGATCTACTAGCAATAAAGTAATGCATTGCACGAGGGTTTAGTAACAAAAGCA
TGTTAATAACCGGGTTATAAATAACTCAGAACGTTTCGAAAATCGACATAGTGACTGGCC
TACTATATCACCGAAGACGTAATAGACTATATATGCATAACACGCACATGCTTTGCGCCA
TGTATATATATGATATTTGAATATAGATTTGATCACGCCGAAAGCTGTCCAGACTAAGAA
TGCTTACAAAGGTAAGTTTCAGACAGTTCTATAAAGTTACACCAGCGTTATACAAAGGAT
CTGTATGGCAACGTCAGACAATTTGCGTAACAGGAAGCAGAACTACTTGTTTCTAACGTC
ACAGTCCCCTAGCGGCCTAGTGAATAACGGTGGCGAAAGATAGATAGTAAGTTTTTTTTA
TTGTTTTATGTCCTTGGAGAGGTAAATAAATTAACTAGGAGATGATTGAAAAAACATTAT
TACGTCCACAATATGAGTATAGTATAGCATTGTAAGGTTGTATGTTTGAGTAAGACTATC
TAAAAAAGATAAAAAAGAGATGAAGTCTAGGATTTGTTTTTCTTTTTACAGCATTGTCGT
TCAATTACCGCGTATATATGTATTTGTATTTTTAAAATTTAGCGTATATTTAGCTGCATT
TAAAGATAAAATGGGCTACTAAAGAATCCTCCCCAACTAACTGCTAGTCTAAATAGTATT
CTTCACTACTGTAACAAAGTTGCATTTCTTCTTTTAGTGACTGGCATCACTTCTTAGAAT
GTAGTTGCTAATTTTAACTTGTAAAGCCAAAACTATACACAAACAATGGAAAGGATACCC
AATGACGTCAAAGGTGCTTTCCCCGAGCAGCAACCCAAAATTAAATGTGTTATAGTTGGG
GATGGTGGATGCGGTAAAACTTCAATGCTGGTTGTATATACGGAAGGCGAATTCCCTGAA
GTAAGTTTACGTTTAATTATAAACTTTTTTGTATAGTTGTCAGTTTCAATACAAATATAG
TGGGATGGGGAAAGATGGGACAACTTTAACACCTAATATCCAAATATTCTGGTGGTGTTT
TAAAGAATAAACAATGGTCTACGCCCTACGGGGTCGTAAGGATACGGTTTTATGATTCTT
TGTATGTTCTTTGTTTACTACCAAATGGGACGAGAAAATCGAATGAAAAGGTGTCCCATC
TCCCCCCACCATACTATATATGACAGTCCGTATATATACTAGGGCGAGCAGGATAATTGG
ATAATATGTGCTAAAGGAATCCCATATCTTCCTTAACAGTACTATTTGGTATAGTTTGCT
TATACTAAATTTAATTAGCAACCCGCTGTTGTTCAAAGGTGTACACGCCCACGGTGTTTG
AGAATTACAGCAGAGAGGTGGAATTAAATCGAAAGAAGGCGGTGCTAACATTGTGGGATA
CGGCGGGTATATATTAGTACATACGTGTTTATGCAAGACATCGTAGGCTTGTTGACTTAG
TTTCGGTTAGCATGGAAGTGTAGTCTATGTTCTACGTGGGTTATGTTCTTGTCGAGGATC
TGGGATTAGGGCTAAATTCAGCCTATTATTACCACAACATTCAGACTGCTTTTGTAGGTC
CAAATGTAACATATGACTAGTGTGTTCTGATGTGTGTTTATAATACAATAAACTAGCGCA
AACTGTTTGTCCCATTATGTTTAGTCATATAGGTCATATGAGAGTAAATGAAGTGTAAAC
CAAATGTTTACTTGTACCAGGTCAGGAAGATTATGACCGGCTTCGACCTCTCTCTTACAA
CAACGCA





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