Login
Help

Submit your Data

  1. Clone 'cien230630'
  2. Clone 'AJ493963'
  3. Clone 'citb097p15'
  4. Clone 'cign071h06'
  5. Region 'REG00000664'

Cis-regulatory Region

Name

Ci-RhoD 448/990

Short name

n/a

Region ID

REG00000664

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Lionel Christiaen (2010-04-25)

Annotator

Clara Degos (2010-04-25)

Curator

Delphine Dauga (2010-05-05)


Description

Region from +448bp to +990bp of the RhoD/F gene, containing the second exon.



Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.

Coordinates in the paper : +380/+922

Hierarchy of Regulatory Regions

Modification of Ci-RhoD 228/989 by deletion

Construct(s) made to test this region

CONS00000646: pCi-RhoD 448/990 bpFOG::LacZ

Overview of functional TF binding sites in this region

7,847,8147,848,355

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Fox n/a TGTTTGA [616 / 622]
2 Fox n/a TGTTTAT [707 / 713]
3 Ets n/a TGGAAG [754 / 759]
4 Ets n/a AGGATC [796 / 801]
5 Fox n/a TGTTTAT [896 / 902]
6 Fox n/a TGTTTGT [925 / 931]

Sequence

Aniseed Coordinates: [7,847,814 / 7,848,355] on scaffold KhC1

Transcription start site is based on the start of the first exon of the KH transcript model.

Show sequence

Length: 542


CCACCATACTATATATGACAGTCCGTATATATACTAGGGCGAGCAGGATAATTGGATAAT
ATGTGCTAAAGGAATCCCATATCTTCCTTAACAGTACTATTTGGTATAGTTTGCTTATAC
TAAATTTAATTAGCAACCCGCTGTTGTTCAAAGGTGTACACGCCCACGGTGTTTGAGAAT
TACAGCAGAGAGGTGGAATTAAATCGAAAGAAGGCGGTGCTAACATTGTGGGATACGGCG
GGTATATATTAGTACATACGTGTTTATGCAAGACATCGTAGGCTTGTTGACTTAGTTTCG
GTTAGCATGGAAGTGTAGTCTATGTTCTACGTGGGTTATGTTCTTGTCGAGGATCTGGGA
TTAGGGCTAAATTCAGCCTATTATTACCACAACATTCAGACTGCTTTTGTAGGTCCAAAT
GTAACATATGACTAGTGTGTTCTGATGTGTGTTTATAATACAATAAACTAGCGCAAACTG
TTTGTCCCATTATGTTTAGTCATATAGGTCATATGAGAGTAAATGAAGTGTAAACCAAAT
GT





By clicking "SEND", you accept the terms of our Privacy Policy.