Aniseed - Cis-regulation

Cis-regulatory Region

Name

CREB/ATF-c 3238/5659

Short name

n/a

Region ID

REG00000707

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

no_output

Author

Pierre Khoueiry (2010-06-08)

Annotator

Delphine Dauga (2010-06-08)

Curator

Delphine Dauga (2010-07-22)

View position in WashU

Description

Root region, untested.

Coordinates are base on the longest KH transcript model.

Hierarchy of Regulatory Regions

CREB/ATF-c 3238/5659 REG00000707 [ no_output ]
- CREB/ATF-c 3238/3404 REG00000257 [ inactive_region ]
- CREB/ATF-c 5494/5659 REG00000708 [ inactive_region ]

Regulated gene(s)

KH2012:KH.C1.26 (ATF1; CREB1; CREM)

Construct(s) made to test this region

n/a

Overview of functional TF binding sites in this region

7,316,9857,319,405

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [7,316,985 / 7,319,405] on scaffold KhC1

Sequence from JGI V1.0

Show sequence

Length: 2,421

AAATGTAATGCATATTGTGTTTCAACTTATATGAACCATAGAATGATATCATGTACAAGA
GAAATGTTATCGTTTAGCAGTAACAGCAGGAAGTAGACTGGCTAGAGAACTGAGACCAAT
TTCCGGTGCTGCTCACCAGTTTCAAAACAAAAACAACAAAGCAAGATCGTTCTTGCACTG
TTGTGTTGCGAATATTTAACAAACAAGAAAAGAATAACAAATTACAATGATGTTTTCCAC
CCCGTGTTTGCATATGTGATAGGCTACTGTATTGTTAAACTCTGTTACCTGTTCCACTCC
CAGTTTGGTATGCTATGGTTGGTGCTTGTAATGGAGTTACCATTTGACCACCGGAGTCAG
ATTCGGAGCTTTCTGAAGATTTGCTTCCACCTGGTTCATCTTTGACTCGTTGGTTTGCAT
CTGGTTGTCCTGACAACTCGTTTAAAATTTTCCTGTTTGTTAAAATAACAATTTAGCTGA
TTTTTTAAAAGTTTTTTTCTAAGAATAACCATAATATAAACAGTAAACATTGCAACAAAT
AAACACAGGCGGTGCACAAACAAACAAAACTTGGTATCGCTTGTATATTTAAAAAAAAAA
AAAATATGATTACTTCTAAGACGAAATGACTTTAATACCCTACTCTGTCTCGAAAAACCA
ATAAACTGAAAAAGCAATACCTGTGCTTATACAACCAGCAGCATGCACAGACTTAATCAA
GACCGAGCAAAGCAAAATAATGAAATTCAAGTGACCTACCAGCCATAAGGCTGCTGCTGT
TGTTGGTCGTAGTCATTATAATACTGCGCAGTTCCGTACATACTGGTTACGGCACACGAC
TTAATAAGCGTCAAACACTACCTCACTCTAGTCTTACGATGGAACATTAAACAGTAAGCT
GAATTGGCATGTCAGCACAGGATGTGACATATTTACATAATAAAAGTAATTAATTTGCCT
TTTTTACCACTGTACGGTTCATTTTAAATGTATATGGATTGTCATTTATGATGTGCTAAG
TTGTGTATGCAGTATGTGAAACGAAAAAAAGTTAAGATTATCGTCTGCAGTTGTAATATA
GTGTTGGCGCTTAGGCCGATAACGTAAAATGCAATAACTTGGTAATAAGAGAAACTAAGT
CTTTGGTATGCATTTATTTGCTAGTTGTATGAAGATTTATTATAAGATGCGTTACCTGTA
GGAAGGCCTTCTGGACAGCAGTTCTCGCCTCTTCGCAGTATCCTGCAAATAAAAGGAAAA
AAATTGGAATTTAAAATATCGCACTTTATTAAAGGTTTGTATAAATTAAACATAAGAAAC
CTTTTTAATATGTTTATGAATACATCGGAATTAGTTTGATAGAATAACTAATAAACTGTT
GGCATAATAGATTAATCTTTTTCATGTATTCTTATTATTAGTAACAAATTAACAATATTT
TTGTTTTACTCTGTAAGTGACTATTACCAAATTATGCAAGCTATTGATTACCTGAGCAAC
AGGTTGGCCTGATTGTTGACTTGATATGACTGTTTGTTGGCCTTGAGCTGAGTTGATTGC
ATGTGCCATTGACACTGGTAAAGTCACCATCTGTGTTTCGCCGGAACCAGACTGCAAATC
ATCAAATTACGAATTCATTATAATGGGTATTCGAAATTTGCGAACATGACATATTAAATC
GAACATCTGACATGGCTTCATTAATAATGAAGTTTATAAAATGTGCATTCACGCAATGTC
ACTTACAATAACTAATAATGTCTTGTTAATTTATACTCTTAAAATACTACCAACTAATGG
AGTTCTTGGCAGTTCTATGCTATGCTAAATAGAAAGCTTCGCAGTTTGTTGCCATTAAGA
TATCAAAACATTAAACTGCACTAACTGAATTAAACTTACATACATATACATATATTTATT
CTTTTATACAGACAATGACATCAAATTATGAAATACTAAATTAGAATTCCTGCTTAGGGC
TTCTTAACATAAACTGGTATTGCATTTAATTCTAATTCAACTTACCCATTCCTCTATATG
AGGCAACATACTCATCATTTTACAAGTTATCACTAAAAAATGTGTTTTACTACTACTAAA
CCTAAAACTTCCGGAACATAGAGGATTTAAGTCAGTCCTAAACAGGAAAACATTAGCCTC
ACCCACTTAGTGTGAAACTTTAAGCAGAGTGACAAATAACACTGCTGATGTTTTCACAGT
AAGACCGAGACAACAGTACAGCTACCCTGCTACTATAAACAACAAGTCAGGTAAACCACC
CAGTTGAGTTGCTAAACTATCAATACAACTAACTTCTCACAGGCTGCCGTACAGTGCAGG
TGTTGCAGTGTTAGTGATACATAGTAAGATAGAGGAAGGAAACACTTCCCCCTAGAATCG
GGCTAAGAGTCATGCAACAGA

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802