Aniseed - Cis-regulation

Cis-regulatory Region

Name

CREB/ATF-c 5494/5659

Short name

n/a

Region ID

REG00000708

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Pierre Khoueiry (2010-06-08)

Annotator

Pierre Khoueiry (2010-06-08)

Curator

Delphine Dauga (2010-07-22)

View position in WashU

Description

This region does not appear to regulate CREB/ATF-c.

Coordinates are base on the longest KH transcript model.

Hierarchy of Regulatory Regions

Modification of CREB/ATF-c 3238/5659 by deletion

CREB/ATF-c 3238/5659 REG00000707 [ no_output ]
- CREB/ATF-c 3238/3404 REG00000257 [ inactive_region ]
- CREB/ATF-c 5494/5659 REG00000708 [ inactive_region ]

Regulated gene(s)

KH2012:KH.C1.26 (ATF1; CREB1; CREM)

Construct(s) made to test this region

CONS00000677: CREB/ATF-c 5494/5659 pFOG::LacZ

Show in situ data

Overview of functional TF binding sites in this region

7,319,2417,319,405

	Motif Name	Binding Factor(s)	Sequence	Position in Region
1	ZnF_(GATA)	n/a	TATC	[5,544 / 5,547]
2	ZnF_(GATA)	n/a	TATC	[5,556 / 5,559]
3	ZnF_(GATA)	n/a	GATA	[5,614 / 5,617]

Sequence

Aniseed Coordinates: [7,319,241 / 7,319,405] on scaffold KhC1

Sequence from JGI V1.0

Show sequence

Length: 165

TCTGTTGCATGACTCTTAGCCCGATTCTAGGGGGAAGTGTTTCCTTCCTCTATCTTACTA
TGTATCACTAACACTGCAACACCTGCACTGTACGGCAGCCTGTGAGAAGTTAGTTGTATT
GATAGTTTAGCAACTCAACTGGGTGGTTTACCTGACTTGTTGTTT

Reference(s)

Khoueiry et al. (2010). A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites. Curr. Biol. 20(9):792-802