- Region 'REG00000812'
Cis-regulatory Region
Name
Ci-Noto1 -1595/41
Short name
n/a
Region ID
REG00000812
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-02)
Annotator
Clara Degos (2010-07-19)
Curator
Delphine Dauga (2010-07-26)
Region upstream of Ci-Noto1 from -1595bp to +41bp. This region is required for Notochord expression.
The corresponding construct is named "p(-1.5k)Noto1/lacZ" in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Noto1 -2078/41 by deletion
512,545514,180
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [512,545 / 514,180] on scaffold KhL20
Sequence found thanks to the primers used in the paper : Ci-Noto1 (BamH-R) CGGGATCCATAACTTTGGATTATTTGT and Ci-Noto1 (-1.5 kHind-F) CCCAAGCTAAGATTAAAATTGCTTGAAA. Coordinates are based on the first exon of the KH transcript.
Show sequence
Length: 1,636
GTCTTCCTGTAGTATGGTTACAATGCAAATGCGGTTTCTTATCTTGTGCATTACAAGATT
ACTTCGATGTTAGGAAGGAAGTCGATGTTTTTTTGTTCTTTCACAGCGTTAAACGCCGCT
TAAAAAGAACAAACAAGGAAATATCTACGCTGACCTGCGCTGAACAACGCTGGGTGTAGA
TATTACTTTGTTCGTTCTTTTTTACACCGAGGCGAGTTACGCTGTAGTGTAAACGTCGCT
TAAAAGAACAAACAAAGAAATATCTACGCTGACCTGCGCTGAACAACGCTGGGTGTAGAT
ATTACTTTGTTCGTTCTTTTTACACCGAGGCGAGTTACGCTGTAGTGTAAACGTCGCTTA
AAAGAACAAACAAAGAAATATCTACGCTGACCTGCGCTGAACAACGCTGGGTGTAGATAT
TACTTTGTTCGTTCTTTTTACACCGAGGCGAGTTACGCTGTAGTGTAAACGTCGCTTAAA
TATTTTTTTGACGAGCTATGGGCTTTTCTGTGTGAACGCCAAAAACCACCGGATTGGTTA
ATATTTAAATACATTTATGACAAAACAACAGCTTTGTTAAACAACAAGGCTTGCATATGA
ACAAACAGAGGCCATGTATAGTTCCCATGTTGTTTACTTTAACTTCACTGTGGTAACAAT
CACTGTTTATTATCAAATAATTGCATTTCATTACCTTTAAAAGGGTGCAATGCCGTCATA
ATGCATATTAATTGCAAATAATTATAACAAAGGGTCATAATTACGACGTCATGTAGTCAA
TTATGACGAAATAAAACACAAAATGTTTTTTTTTTTTGCAAAGTTAGTTAAAAGAACACG
AAAAAACGTGACAAAAAGATGATTCGGCGACAGAACGCGATTTGATTAATGACAATGTAT
CGCGCCACCCGACTGTAACGTCACAGATATCATTTAGAAGACACGACTTATTTATGACGT
AACAGATACGCTGGGTGTGGTGAAACAATGGCTATTATTTGGTCATAAATATTTGAGTGA
CCTACAGGCACTTAGGTGCCAAAAACAAGAGCAATTAGTTGAGGCATGAACGCGAAAACG
CTTTCTGTTGCAAGTGACCAGTTGACGCAAAGAGAGACAGATAAACGGACAGGAACAGAC
AGTGTATTAAGAACTTGATTTAACTGATGTGGAACTCCTTTAGTGAGAAAGCTCTAAGGC
AGACGTTTGCATATATGTGCATAAGGTGTATGGTACTGTGGGCTAAGATACCGTTAGCAG
ATGATAATAAATATTCACTATTTTCTAATCGGGTTTTTAACAATTAACAACGCTCTTTAA
GACTCGAGATGATACGAATATATATTTCTGTAAAGATTTTCTTGTTTACTATTAAATGGG
TCGAAAAAAGAGAACGAAAAACTGACCCATCTTACCCCAACCTGATAGATATTTCTTTGT
TTGTTCTTTTTACATCCAGGCAAGTAACGCTGTAGTGTAAAAGTCGTTTAAAAAAAATAA
ACAAAGAAATATCTACGCTAAAAACGCTGGGTGTATATAGATATGATGGGCAACAAAACC
CAATCAAATACGTTCATTTAAAATGTTCTTAGTAGACAGGTAAACTATTACAAATAATCC
AAAATTATGAAGTTGT
