- Region 'REG00000812' >
- Clone 'cilv038d08' >
- Region 'REG00000821'
Cis-regulatory Region
Name
Ci-Noto8 -446/-218
Short name
n/a
Region ID
REG00000821
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-05)
Annotator
Clara Degos (2010-07-05)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-Noto8 from -446bp to -218bp. This region cannot drive notochord expression, but mesenchyme expression.
The corresponding construct is named p(-0.3 k)Noto8/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Noto8 -1148/-218 by deletion
1,073,7661,073,993
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,073,766 / 1,073,993] on scaffold KhC11
Coordinates were based on the first exon of the KH transcript.
Show sequence
Length: 228
CTTGAGACATATTTCCTTTGCAGCGTCCTTCTTATAATATATGCTACGGTGTATTTGATG
AATAACTGCAAAAACACTAGAGCGACCAATGACGCTACCATTTTATATGACAACAACGAG
AGGAAGTAACGTCATAGCGCTGAAACATCCGCAACATTCCACTGTGGTGTTAAAACCAGA
GTGTGATTTTTAAACATTAGATTTAGTGAACCAAGTTATAAAAGCTTT
