- Transcript 'Moocul.CG.ELv1_2.S24...' >
- Region 'REG00000823'
Cis-regulatory Region
Name
Ci-ERM -3052/76 delta -1493/-402
Short name
n/a
Region ID
REG00000823
Status
Curated
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-05)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-26)
Region upstream of Ci-ERM from -3052bp to +76bp driving notochord expression. In this region, a fragment between -1493bp and -402bp was deleted.
The corresponding construct is named p(-3.0k(d1.5-0.45))ERM/lacZ in the paper.
ANISEED coordinates are different from the paper s coordinates. We took the KH transcript model as reference.
4,853,4894,856,616
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,853,489 / 4,856,616] on scaffold KhC12
The deleted sequence was replaced by "-".
Show sequence
Length: 3,128
TTCCAAACATTATTACATCACAGTAAGGACAATATTATCTATGATGTCACAATCACAAAC
AATTACCTGTCGAGTGCTACGCAAACCAACTTAAACACATCCCCTTATAAGGCAATACTT
GTGTATAAGTACGCAGAACATTGTTGCCTGCAACCTTATATGCTAATCTTTATCTACTTC
AACTTAACTTTTAAAACCAATCTCCTTTTACATTTTCAATGAAAACAAACTTAGAGAAGT
CTAAGCTTATAGCAAATTATTTAAAAACCCATTTTGTATCAAGAAAAGTACCTGAAACTC
ATTTTATATCGAGAAAAATATCTAAAACTTTTAAAATATTTTTTTTTTAACCAATTTTTT
TAAAAGGGGGAAAAAATTAATCTAAACCGCATTTAGCAGGTAACGCAATTTGACGCTACT
AGCCTACCCTACAGCACATCTAACTGGGTGTATAACACTGCATTCCTAGAGCACCAATTG
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-----------CAATTGATTTGAAAAGGGTTGTGCTGTATATGTAAAGCTTTGTATTTGA
TAGTTATAATACGGGTATGCGGTGCGTGTATTGTAGTAGTTTGGTGTTACTAATGTAATA
ATACGCAGATGCTAAAGCTATGTTAGTTTCAGCGTGGGTAAAGTAGTTCTTAAATAACAA
AACACACGTTTAACGTTACGGATAACGGCCCAACTAAACGTATGTAAGTCGGATGTATTA
TGGGTATTAGACTTAATTCTATATCGTGTATTAGCGACCATGTAATACGCCTCCGTAACT
AGTGCTTGTACATCAAACATGTGTAATTAACTTTCGTACACCACGCGTATAGATAAGTAG
GGGTGACGTCATTTTGTTGGCGCAACGCATGAAAGCGGGTTTTAATATAAAATACATTTT
TTTATCCCTTCGAAAGCGGTTACGAAAATCGTATTATTAAACGAGGTAGAGAACGAAATC
AACAGCAAAACACGCTATGGGTAAAAGGTATAGAAAGAGTCAGTTAAAAATCGTGGCTGT
TGAACCCAAAATCTGCAGACCATGAAAAACTGCATTCGTGCGTTGACGTTTTAACGGTGT
GCGAGCATACGACACGTAAGCATACTGCAATGCTGCAAGAAATTCTTACAAATTATGACG
ACCACTCGTCTACGTCACAGGGAGAAATAGTTTTTAGTTTTAAGCAAACTATACGTTGAA
GAAACCTTCGTTAGGTTACAAATTATTTTAGTTTATACGTTAGGGCTATAATTCTTCACT
AGCACCAACGGTACACTATACTTTAAAAACAACATTTTCTGGAATTTTAGTAAAACATAT
TTGTCTTAGCGGGAAGCATCTCTAAACAACCTAACTATAACCTTACGAAAATACACATTT
ACAACGTAACCGTTATATTACGTTCACATTGAACTTAAACCAACTAATGCTACAATGCAT
TGGCTTCTACCAAGCCTCATGATGCGATGCTCATACATTATTCACCCCTGCTGTGCGTTC
TATACAAGCAGCACGACGTCCGTTATCGATTCGAGAATTCCCAACTGTGACGTCATTAAT
CTCGCGACGTAGTGTGACGTAACAATCAAATAATCGACGTCGATGTGATGACGTGTTAAT
TACGAAACAATGTTGGTTTGGCAAATAAGGAAATTAGTTTAGTAGACTTTGATGTAAAGA
CAAGTTGAAAAATAAGTTAATTACGAGGTATTTTATCAAGGTAATTAATCATAAGAAATG
TTACATGAAGACTGTATTTTACGGTAGGTGTTACCGTGTTACATACCAATACAGAATGTG
GAAAAAAATGTCCAATTACGGAGTATTGCTGAACTACGACTTTGTATTTTATGTTTCTTG
TACTTCATGAACATAACGTGAACTTTTATTTACCTCGTATTGGTAAAACGTTAACATCGA
ACATTAAATCCTTTCGTTAGAAAAAGTATTTGTATTTTAACATAAGTTAAAGTTATGTAT
AAGAATATTTCCAAAGGGAAGTAATGTATTTTTAAACGTGTGGCGAGACACGTTAACCAG
GGCACGTA
