Cis-regulatory Region
Name
Ci-Zipper -2736/79
Short name
n/a
Region ID
REG00000831
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-Zipper from -2736bp to +79bp. This region drives notochord expression.
The corresponding construct is named p(-2.8 k)zipper/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Zipper -2949/79 by deletion
1,527,7401,530,554
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,527,740 / 1,530,554] on scaffold KhC11
Show sequence
Length: 2,815
AGATCTGGTGGCGATGTCTCAAAAGCATCAGCAGCCCGTCGTAAGAGACAAGACTCTTCT
TCTTCCTCATCATCATCTTCGGGATCATCTTCTGGATCTTCATCCGGGTCGTCGGATTCA
TCCTCAGAGTCTGAGGAAGAAAGAGTCACAAAACCTCGCAAATGAAAAACTTTTGTAAAG
CAACAGTTTTTAATGCTTGATTTTTCAGCACTGACTTACCATATTTGACACCAAACTGTA
AATGCAGCCAAGGTGTGATGAGATTATGTAATAAACTGACATAGTTCTCATTTAATTAGG
ATTTGTGGTTGATGGAATTATGAAAGCAGCTGAAATGTAGTTTTGTGTATTTTATGCTAA
GAGTAACCAAGCTGCCGCATTTTATCAAATTTTTGTTTCCCAATGTCACGCTAGTATGTA
AATAAATAATTATTTCAGCAAAATTATGGACTTTTACTTTTGAAAATACAAATTATAATA
AGTTAATTTTAACTTCTGACATCACTGAAGATAGTTTTAGTTTTAAACCAAATCGTTTGA
AATGAACAGACATGTACCATATATATGGATTGCCTTGTTTTATTCACCTAACCAATATTT
ATCTGTAATTTTACGTTGTTGACATTTACTCCAGTGAAAACAAAATACGTAAGTAGTTAT
TTTGAGATCGGTCACTTTTGATTATGTACAGTTCAGGCGTGGTAGCTTACTGTTTAACGT
TTCGCTGAGGCATAAATACTCTGTTACTGATTTACTAGTGTCAACAGTACACAAAAAGTA
AAGAAGTGAAAAATATACGATTATATAGAGCTTTTGTAAGGTTTATAGCGGCAACTTTTT
GCGTATTATTATAAGACAGCTGTTTAAACAAGTTAATCACGCACCACATGCATGTTTAAA
TATGCAGACACTAATTGCCCTATGGCGAACAATTATACAATACTTCTAAGAAGTTTGATA
ATTTAAATAACTCCAAATAAGGAAAGGGCGTTTTTTACGCACGTTTTTATAATCGCCTAC
CACTTTACATTCATACTTAAATAGTTCACATACCGCAAATCATTAAAATGGTAAGATATA
TTACTTTTCGTGTGCTGTTCGATGCAGAAACATGCACGCACCGTTATCGGGGAAAACTCC
CCCCAGACGGAACCAACTGACTTCTCGTCTTGACGTAGGTCACGTGACCGTATACAAAGC
GTAGAAAGAACGGGCGCGGCCTGTAAAACAAAATCCGAGCCGTCTTGATGTTCGTCTGGT
TTGTTTCTTTCAATTAAGCACAGTGCAAGTTGGATAGGTGGCTGTCGGACCAGTCGAGGA
TATAATAGTTAATATGATGCAGCTTTTACCCTGATAATCGACAGTGCTGAGAACTTAAAA
CTGTATGGCTGACAAATGCGTCAAAACATATTTTCTGGCGTCACAGGTTGAAATTTAGGG
TAATAGTTAAGGGAAAATATCAAAATGTCGAGCCGACGAACTAAAAAGACGGTTAAAAAG
CGCGCCCAGCGTGCAACATCCAATGTCTTTGCTATGTTCGATCAAGCTCAAATTCAGGAG
TTTAAAGAAGCTTTTAACATGATCGACCAAAACCGTGATGGATTTGTTGATCACGAAGAT
TTGAAGGACATGCTGGCTTCATTGGGTAAGTTGTGTATATGTAGAAGTTCTGTAATGATA
AAACATTGACCAAAATTACATACACTTGTGCTTCTAAAATGCACCAGATTAAAAAGTTTA
ATTTTTCCTTGTATAGAATATTTAATACATAAACTATAGAACGCATTTCTGCCATAAAAC
ACAATTTTTGCATAGTTTTGTTAAGTTTTTCCAGTTCAGGTACATGTATTGTATTTGATT
TTTTTTTGCTAATATGTAATACATTTTTGAGTTTTTATTCCATTTTTAGGTAAAGAGGTT
TCAGATGATTACATTGAGAAAATGTGTGGGGAAGCCCATGGTCCAATCAACTTTACCATG
TTCCTTACAATGTTTGGCGAAAAGTTAAACGGCACTGACCCTGAGGAAGTTATAAGGAAC
GCCTTTGCTTGCTTTGATGAAGAAGGCACCGGAAAAATTAACGAGGATTATCTCCGAGAA
CTTCTCACTTGCATGGGTGATCGTTTCAATGATGATCAAGTGGATGAAATGTACAGAGAA
GCTCCAATCAATGCTAAAACTGGTGACTTTGACTACATAGAGTTCACAAGGATTCTAAAG
CATGGCGCTAAAGAAAAAGATGACATTTAGATACTATTAATAGTTGTATTCTACTGTCAT
CTGAATATATAATGAATCGATATTGGCCGATATAAGTACGATGGTCTGTCTTAAAACCTA
GCACTCCTGAAATCAGTTTTTTTTTAAATAAAAACTGGTTGTTCTATTATTAAGGACTAT
GAAATGGTTTTGGCATTTATATAAACTTTGTTATTGGTGTGTTAACGTTTACTCAGATTT
GCCCATTATGTTGTTAGTGTTAGCAAAACGTAGAGTGTACTATTTCAACTGCATAATAAT
AACCATAATTAATCAATTTAATTGGAATATGTCTGTAATCGAAACCTAATATAATTGTAT
TTTTTTGATTTGAAATTTGATGCTGTCATTATAAAATAATCATCTGCACTTTTTTTCCTG
AACAGTTGTAAATAATTTTTATGCCACAAAGTCACACTATGGGGTGATTTGGTATTGCCT
TGATTTCAAATGTAACTCTAAAACTTTGCATTTCAGGAGACTTATTATTATTTTTTGAGT
GAGATTTTGAGTTAACTTTTTTCCGAGTGTTGACTTCAGTACAGAATGGATGACA
