- Transcript 'Moocci.CG.ELv1_2.S41...' >
- Region 'REG00000832'
Cis-regulatory Region
Name
Ci-Zipper -1983/79
Short name
n/a
Region ID
REG00000832
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-Zipper from -1983bp to +79bp. This region can t drive notochord expression.
The corresponding construct is named p(-2.0 k)zipper/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Zipper -2736/79 by deletion
1,527,7401,529,801
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,527,740 / 1,529,801] on scaffold KhC11
Show sequence
Length: 2,062
ACTAGTGTCAACAGTACACAAAAAGTAAAGAAGTGAAAAATATACGATTATATAGAGCTT
TTGTAAGGTTTATAGCGGCAACTTTTTGCGTATTATTATAAGACAGCTGTTTAAACAAGT
TAATCACGCACCACATGCATGTTTAAATATGCAGACACTAATTGCCCTATGGCGAACAAT
TATACAATACTTCTAAGAAGTTTGATAATTTAAATAACTCCAAATAAGGAAAGGGCGTTT
TTTACGCACGTTTTTATAATCGCCTACCACTTTACATTCATACTTAAATAGTTCACATAC
CGCAAATCATTAAAATGGTAAGATATATTACTTTTCGTGTGCTGTTCGATGCAGAAACAT
GCACGCACCGTTATCGGGGAAAACTCCCCCCAGACGGAACCAACTGACTTCTCGTCTTGA
CGTAGGTCACGTGACCGTATACAAAGCGTAGAAAGAACGGGCGCGGCCTGTAAAACAAAA
TCCGAGCCGTCTTGATGTTCGTCTGGTTTGTTTCTTTCAATTAAGCACAGTGCAAGTTGG
ATAGGTGGCTGTCGGACCAGTCGAGGATATAATAGTTAATATGATGCAGCTTTTACCCTG
ATAATCGACAGTGCTGAGAACTTAAAACTGTATGGCTGACAAATGCGTCAAAACATATTT
TCTGGCGTCACAGGTTGAAATTTAGGGTAATAGTTAAGGGAAAATATCAAAATGTCGAGC
CGACGAACTAAAAAGACGGTTAAAAAGCGCGCCCAGCGTGCAACATCCAATGTCTTTGCT
ATGTTCGATCAAGCTCAAATTCAGGAGTTTAAAGAAGCTTTTAACATGATCGACCAAAAC
CGTGATGGATTTGTTGATCACGAAGATTTGAAGGACATGCTGGCTTCATTGGGTAAGTTG
TGTATATGTAGAAGTTCTGTAATGATAAAACATTGACCAAAATTACATACACTTGTGCTT
CTAAAATGCACCAGATTAAAAAGTTTAATTTTTCCTTGTATAGAATATTTAATACATAAA
CTATAGAACGCATTTCTGCCATAAAACACAATTTTTGCATAGTTTTGTTAAGTTTTTCCA
GTTCAGGTACATGTATTGTATTTGATTTTTTTTTGCTAATATGTAATACATTTTTGAGTT
TTTATTCCATTTTTAGGTAAAGAGGTTTCAGATGATTACATTGAGAAAATGTGTGGGGAA
GCCCATGGTCCAATCAACTTTACCATGTTCCTTACAATGTTTGGCGAAAAGTTAAACGGC
ACTGACCCTGAGGAAGTTATAAGGAACGCCTTTGCTTGCTTTGATGAAGAAGGCACCGGA
AAAATTAACGAGGATTATCTCCGAGAACTTCTCACTTGCATGGGTGATCGTTTCAATGAT
GATCAAGTGGATGAAATGTACAGAGAAGCTCCAATCAATGCTAAAACTGGTGACTTTGAC
TACATAGAGTTCACAAGGATTCTAAAGCATGGCGCTAAAGAAAAAGATGACATTTAGATA
CTATTAATAGTTGTATTCTACTGTCATCTGAATATATAATGAATCGATATTGGCCGATAT
AAGTACGATGGTCTGTCTTAAAACCTAGCACTCCTGAAATCAGTTTTTTTTTAAATAAAA
ACTGGTTGTTCTATTATTAAGGACTATGAAATGGTTTTGGCATTTATATAAACTTTGTTA
TTGGTGTGTTAACGTTTACTCAGATTTGCCCATTATGTTGTTAGTGTTAGCAAAACGTAG
AGTGTACTATTTCAACTGCATAATAATAACCATAATTAATCAATTTAATTGGAATATGTC
TGTAATCGAAACCTAATATAATTGTATTTTTTTGATTTGAAATTTGATGCTGTCATTATA
AAATAATCATCTGCACTTTTTTTCCTGAACAGTTGTAAATAATTTTTATGCCACAAAGTC
ACACTATGGGGTGATTTGGTATTGCCTTGATTTCAAATGTAACTCTAAAACTTTGCATTT
CAGGAGACTTATTATTATTTTTTGAGTGAGATTTTGAGTTAACTTTTTTCCGAGTGTTGA
CTTCAGTACAGAATGGATGACA
