- Clone 'AHC0AAA240YM12' >
- Region 'REG00000826' >
- Transcript 'Moocul.CG.ELv1_2.S11...' >
- Clone 'AHC0AAA243YI17' >
- Region 'REG00000844'
Cis-regulatory Region
Name
Ci-beta4GalT -438/63
Short name
n/a
Region ID
REG00000844
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci- beta4GalT from -438bp to +63bp.
The corresponding construct is named p(-0.5 k) beta4GalT/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-beta4GalT -697/63 by deletion
3,442,5433,443,043
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,442,543 / 3,443,043] on scaffold KhC11
Show sequence
Length: 501
GGGCCCAACTGTTAACAGTTAAACACACACTCTACTACGTGTGTAGAGAAGCCAGTCCAA
TGTTGCTCTTACGTGTATATGCTGGTGTGGGATCAGGAAATGACCAACCTATTCTGTTAT
GACACCAGACTAGTTTCTTGTTTTAATGTTATCACAGCTAGGGACAGCTGTTAGATATAT
TACCGTTAGAGGAAGTAGTTCTGTGCCGTCACATGTGCTTAATAGGATAAACTAGTCTTA
TTTCAGGGTAGTATTATTGAACTGATTGTAAACCTTATCTCGTGACGGGAATGACGTGAC
TGGTAGTTTTGGTGTGTGCACTATTAGTTTGGCGTCAGTTTTTGCGAGGTGTTAAATAAT
GAAAGCGGTATCGCCTGTTTCGTATAACTGTTTGTTAACCGGTTTAACTGTTTATTTTAT
TGATGCTTTTATTCGTAGGTGCTGCTAGCTTAATATTTCAGGAGCGGTCTATATTTTGTA
TACGTGGTTACATGTCACTCA
