- Region 'REG00000851'
Cis-regulatory Region
Name
Ci-netrin -2938/71
Short name
n/a
Region ID
REG00000851
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-12)
Curator
Delphine Dauga (2010-07-29)
Region upstream of Ci-netrin from -2938bp to 71bp.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
5,157,7305,160,738
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,157,730 / 5,160,738] on scaffold KhC12
Sequence found thanks to the primers used in the paper.
Show sequence
Length: 3,009
GACGCGAATTGTCGATGAAATGGCGAAAAAATTCGAAAATTTTTATTCAACTTTCTTTCG
TGTAAGTTTCCGAATGTTGGGTACTGTGACGTCACAGGGGCTTCAATCGGCACGCGCGGG
GGGCGGTGGGGCCAGATATTCTGGGTTCTTTTATCTCGCGGCATAGCGTGTCTAGATATC
CGCTTTGCTTCGAGTAGCAAACCAAATAAACACAACCCCAGCGCACGCTGTGCTTACATA
CTTGGTAAACCGAAACGACCTCGAGAAAGAAAAATATTCTGCGGGACCTCGCGACTTCTA
TCCCGGCCAAGACCAATTAAAATTCCCGATCCCCGAAATCTTCTCCTAAGCTATAAATAC
GACTCTAATTGTTGCAGCAGGATCAAGTTACGTTTAGCACGACAAGCTTTGGCGGATTTC
CAGCGAGATCTTTAAAGTCTTTGATTTCTTTAGCGCTTGGTAATTAAATCCATTTATTTT
GTCCTAATATAAACCTGTAACCACAAAAATGTGGGTTTGAGTAATTGATATTCACACCTG
GTGTATTGTGTCGCAATATCCGTTTAACCCTGTGTGCTGCTGGATATACGGTGTATATGA
AGCTGCGTTAAAACTTCAAACTTCATGTTTTAGTTTTGTTTTTGTACAGATTTAATTTTA
GCAGTTACTACGTTTTGTAATTGATAATTTTCAAAAAGTAGTTTTTACCCATAGCATGTT
TAACCACTGTCGTTTTGTTGCTGTTACATCAACTTTTTAGAGCATAGGTTTCACGAAAGA
TTTAATCAAAAACAAATAGTATAAAAATTATCTTAAGCGAATATTCGTACTTAGAAAACT
CAAAAGAATTCGCATACCCCCACACACCTCTATTTCTCAACTTTGGAATTCGCTTCCTTT
TATTTTGAAGCAGCTCATTAAACGTCCAAAATAAAACAACCCCCACTTTGAACGTGGCGG
TCAGTACCAACACCATCTCATTACCCGAGCACCAACACGAAGTAATTCAAACTTTTGTTT
GGATTGTTCTTCGCATTAACAACCACGACCGTAAGGACTTAAGGACAAGAATTTTTAAAG
TTACATACGTGGTAATTCGTAAGTGATCACGAATGGTCCGGAACCAGAACACCCGTGTTA
TAACGATCGTCGTTGCCCCGCCATGCGAGGATAAATAAGTTACATTTGTTCAAGCTTTAT
TATATATGCTACCGCTAAGATAACACAATTGTGTTTTAAAGGGCAGACACATAAACAGGA
TGTTAAAATATTGATCTTATAAATATATGTAATGCCATAGTAGACACGCGTTTGAACGTT
CATACCACAGCAGCAGATTCAGCTTGCGCAAAAACAAATAAGCGTGGAGTAATCAGGAAG
GGAAAGTTACAACAAACTTCGGCTGTTTTCGGATAACTTCGGAAACGGAAACACACTTTC
GGAAGTCTGGTCTCATTTCGGATTTCACCATGTGTGGTATTGGGATATAGAAGAACTTTG
TTGAAACGAACACAATTACACCTTGCCGCAACACAAAGTAAAATCATTAATTCGCGGTTT
CGCGCGACCGCGTTCAAATACACGTCATAACCGCTTCTGTTACGTCACAACAGCTTAAAT
ATCACGAGTTTAATTTTTAATTTATTTTTTTAATTAACCTTCGACTTTTTAGGGATTCAG
AATTCGGAAAATAATTGACCGGTAATTGTGACGTAATAACGGATGTAAATTCTTGCGCCA
GGTGTCGCGATAAAAGCGCTTTAGAAATCGCGGCGAGTTTTAGAATTTGTAAAAGTGGAA
ACGTCTATTGTGTTGTCTGTGTATGTATTGTGACGTCACACCTGGGTTGAGTAATCTTAG
TTTAAGCAAAGATAAAACTATGAACGACTAAATAACATTAGCTTTACTTATCTGAGTAAT
ATCAATAATCTAAACAAGTAACTTAAATATTATTCATCTTTTCAAACACGATAGCCAAGA
TCAAATGAAATAAGCGATTAGAAAGAAACTAACAACAAAACGACAGTCGTTAAAATACAT
TATTAAAGGGTAAAAACTACTGGAGTGAAAGTGTCATGCAAGTAAAAGTGTGGCTGGTAG
TACAACACAACACAACTAATGTAATACCGAATAAAAATTACTGTCGTTGCCCCGGCATGC
GAGGACGTTTTCCAAGACATAAGACGTCCGATGGGCAGACAAAAATTAAGAACCCCCGCG
CTGGGACACGGCATAAAATATGGGACAAAAAAGGCTATGTATAGTAGGGTAGGGTGGGGG
AAGACGGGATAACTTTAGCACATAATATCCAAATATCCTGATCGTGTTTTAAACAATTAA
CAACGGTGTATGGAAGTCGTGGAGATACAGTTTTTATAATTCTCTGGTTTTGTTTTGTTT
ACTACCAAATGGGACGAGAAAATAGGATGAAACGGTGTCCCATCTTTCCCCACCCTACTA
TATCATATACAGTATTTTATTCACGCCACTGTACCGATGGAAGTTAGCCCAGCACTACGA
TACGACACAGCAAGTAATAATATAATTGCTTCCATTGTATAACACATAGAGGATTAAGCT
TGGACGGGAACACCTGGGGTGTGTCTGATATCCATGTAGTCGTGGTATGGGCACGTAATG
TAGTGTTGGGCAATATTTTGCTTATAGTTACGGGGTGTATATATAGGTTGTGTGTAGTAT
ATAGATTTTATATGTGGGAGCCTGTGTGTGTGTGTAGCATACGGCTGTTAAAACGTTTAT
ATCGTGGACCAAGTGTGTTGTATAAAAGCATTGAAAGTATAAAGTACTGTTGGGTAAGTT
GAAATACCTTTAAGATGGAGAACCTTTTTTACAGACAAATTTATTATATTGTGGCTTGGT
TATTTGTATAGTTGGTAAAAAAGGGCTTTTTAAAATCCTAACCTCTTTACGTTTACAGAA
GTAACTGCCATAGTGTATTGTCCTGTTAGAAATGTACCTTTGAGACTGTAGTGTTATATG
CTCTTACTA
