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CIS-REGULATION

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  1. Molecular Tool 'pFog>Orphan bHLH-1' > 
  2. Molecular Tool 'RAR-TALEN (Yoshida2017)' > 
  3. Region 'REG00000863'

Cis-regulatory Region

Name

Ci-FCol1 -2200/1

Short name

n/a

Region ID

REG00000863

Status

Not Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Jamie E. Kugler (2010-07-09)

Annotator

Clara Degos (2010-07-09)

Curator

Clara Degos (2010-07-09)

View position in WashU

Description

Region of 2.2kb upstream of Ci-FCol1. This region can drive expression in muscle.

Aniseed coordinates are based on the JGI transcript.

Hierarchy of Regulatory Regions

Regulated gene(s)
n/a
Construct(s) made to test this region

CONS00000824: pCi-FCol1 -2200/1::LacZ

Show in situ data
Overview of functional TF binding sites in this region

1,117,2401,119,440

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,117,240 / 1,119,440] on scaffold KhC7

2.2kb was taken before the +1 of the JGI transcript

Show sequence

Length: 2,201

CGAGCGAAAAAGTCTCTCAACGAAGCTACGTCTCGCTATCCTCTGGCGACCCTTTGGGAA
GCCGATGAATCGACTGTGTCCAACCACGGTAGATGTAGCCAGGTCGTGCGAATGCCTTCT
TCTTTAAGGCCGTCGATTTTGTCTCTGGATCGGCTGGTTTCTTCTTATATTCTCTCGAAA
ACGTGTAAGCGAGGGGCGGAGTGCGAAATGCAAAGTTTGCACTGTGGATCACGGTACGAA
GTTGAAAGGAAAGGACCGACGGTGCTGCAATTAACAACCTACTAACACCAGGATGTCAAA
TATCACGACCTCATTCTGTGGAGAAAGTGAAAAAATGAACTAATTAGTCTGGCCGTTGCT
GTCAGTATACAGAAACACACCGGGCACTTAAACGTTACCACTACAGTATATTACATTACC
TCACCCATATGCGTTGTTAAAAAATCATACTCACCACTTGACTGGTTTACCAAGGTACAT
AGCCAAGCATTTATTTTAAAGGGGGTGCAAAACGGTTATGCGATGAGCGTGCAATCCTTT
ATTGTATTTTTTAAAACCGCGGTAAGCCAGAACTGCTAACAAAATTTCAATATCGTTCTA
CCCCAATGACTTTGAAATTGTTTGAAAAAGAAAATACTATAGTCGGTTTAATCTATACCA
TTTCCATTTTCCCGGCAGGTCAAGGATGCCGGTTATAACCTCTTACAGCTGGATTGGATT
ACCGGCAGCGACTTAGCTGGTTAACCTAGCTTCGGGCTAGGTGGTAAGAGTTCCAGACAC
AATTTCCTGAGCTCGTAATACCCAAGGCCGCGCTTTTACCACACCGACGCCAGTTTTAAC
GTTCGACGGTTGTCTGGCTACCCAGGTTCAAGCTGACGTTATTCACGGCTCGTTGGTCAC
GAAATTACCAGCACTTTCAGCGCGCCAAGGAAAGCCAAACAAATCCAGGCCAATAATGAA
AGCTCTGTACTGCGATGTTACCCCGAAATGTGTAGTTTTAAAATAGGACATGACCGAACA
ACGTTAACGCCTGTGTAGCCAACACCAACGGCGATTACTTTCGTATGACTCATAGTCTCA
AGCTGATATGATTTCCTACATTTTCCACAAGCGACAAACAAATTGCCGACAGACGACCGC
CGGCCTATTTGCAAATTTAGTCACCTTTTCGTTAAAGGTTGCGAGCTGTGGCTTTGTTGT
CTGATTATCAAGATAGAAAGTTTCGCTGATCTTGACTAACGAATGACTATTTCAGGGCAT
ACTTTTTCTCGAAATTTCGCGGTTTGGTTCTCTATTTTACTTGTGCAACTGTATATTTTG
CATATATGAGACGAAATCTCTTATTAATAAACTGTGGTAACGCCGTGCGTAAGTTATGAC
ATTTTACGTCACGAAAGCTGTTCAAATATGCGCTTTACTTAAATTATGCGGACGGCGAGC
GACACACGGCTGGGAAAGCTCAGACAACAGTCCTGCCACAGGAATGCGTTTATCACTGAA
ACAACAACGTTATACAAGTCCTCGTTTATATAATTAAATTCCCTGTGTCCCTGCACGTCA
ACCAAATACTGAACCGCTAACTCAAATATGCAGCCACATTTTATGCAGCGACTTAAATTG
CTTTTGATAAACACTTCTTTTGAACGATTGCTGCTTTTACGGTTGTCTAAATTAAGGGCA
AGTTTCTGCACTAAAAAGCAGGCCCTTTACGGTCGTTAATACAATTTGTTGCAGGGTTAT
GGCTGTGAATGTCGAAGGTTACAGTCGCGGGTCCTTTTATTAACCAGAATGCCCCAGTTT
AGTTGATAAATTGCCATCAAATGCTTGCGGGTTTATGACAGCCGCCAATTCAGGCCAAGG
CATGTCGAACAACGACTACGAATGTAGCCCGTCAGATGAAACAACAAAGTCTGCCGCAGT
AGGTGGTCCACATCGTTAATTTCGCGTTGTACTTTATAACAACTACCAAATAAATTTGAT
TCGAGCCCTAAGATATACAAATACGTAGCAGGATCCCCAATCATTTTTAATCTTGTATAA
CATTTCTATTTTAAAATATGAATAGACAATATGATGTCACAATATAAATACAAACAAAAA
TTCCAGAACTTCGTTTATGACAAAACTGCATTTCATATTTTGAATTGAACTGAAAACACA
AGCAAATTGGTCGTATTGCGGCCGTTTTTTTTGTTCAATTT

Reference(s)

Kugler et al. (2010). Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis. J. Cell. Sci. 123(Pt 14):2453-63

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