Cis-regulatory Region
Name
Ci-FCol1 -2200/-1800
Short name
n/a
Region ID
REG00000864
Status
Not Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Jamie E. Kugler (2010-07-09)
Annotator
Clara Degos (2010-07-22)
Curator
Clara Degos (2010-07-09)
The distal region (400bp) of the region of 2.2kb upstream of Ci-FCol1. This region contains two E-boxes sites.
Aniseed coordinates are based on the JGI transcript.
1,119,0411,119,440
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | bHLH | n/a | CAAATG | [-2,184 / -2,179] | |
| 2 | bHLH | n/a | GTCCAC | [-2,076 / -2,071] |
Aniseed Coordinates: [1,119,041 / 1,119,440] on scaffold KhC7
Show sequence
Length: 400
GTTGATAAATTGCCATCAAATGCTTGCGGGTTTATGACAGCCGCCAATTCAGGCCAAGGC
ATGTCGAACAACGACTACGAATGTAGCCCGTCAGATGAAACAACAAAGTCTGCCGCAGTA
GGTGGTCCACATCGTTAATTTCGCGTTGTACTTTATAACAACTACCAAATAAATTTGATT
CGAGCCCTAAGATATACAAATACGTAGCAGGATCCCCAATCATTTTTAATCTTGTATAAC
ATTTCTATTTTAAAATATGAATAGACAATATGATGTCACAATATAAATACAAACAAAAAT
TCCAGAACTTCGTTTATGACAAAACTGCATTTCATATTTTGAATTGAACTGAAAACACAA
GCAAATTGGTCGTATTGCGGCCGTTTTTTTTGTTCAATTT
