- Region 'REG00000868'
Cis-regulatory Region
Name
Ci-TH -3526/71
Short name
n/a
Region ID
REG00000868
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Katsumi Takamura (2010-07-21)
Annotator
Clara Degos (2010-07-21)
Curator
Delphine Dauga (2011-08-16)
Region upstream of Ci-tyrosine hydroxylase 3 (Ci-TY3H) from -3526 bp to 71bp.
This region named (dCi-TY3H up in the paper) can drive expression in the nervous sytemp, more precisely in the dopaminergic neurons.
6,639,9986,643,594
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [6,639,998 / 6,643,594] on scaffold KhC2
Sequence found thanks to the primers used in the paper. Coordinates are based on the first exon of the KH transcript (KH.C2.252.v1.A.SL1-1).
Show sequence
Length: 3,597
TTTTTCTTCATTTAACGTTTGTTGCAGAGCAGCTCATGATAAAAACTTTTGAATTCTGAA
GTTATTTTTGTATCTCCAACTACGGTAGCTTGACTTTTGTTATTATAATCATATAATTTG
TCGTTTGAATACATATGACTTATTACATATGACGTGTCAAACAAATGGTTGTCTAAAAAT
AGAAAAATGAAACGGAGGTACATAAGCGGTTACTCAGAAGCGTGAACGAGGTGTACAAAA
TCGAACATACGTTTTATAATGACTGTCGTTGCCCAACCTCGCGTGCATAAATAAGCTATA
TACGTGACTACTCAGCAGACATGAGGGACACCCGTTTTGTAACGACTGTCTCTGCCACCA
CACCGAAAAATGAATAAATGACATTCATTTATACACCATATGCACATGGTACAGCTCACT
GCAGAGTAACGGGTAACGTGTATTCATATCATACAGGGGTAATGTTTGTCTGTTATTGAC
TGTTGCTCGGTAAAAATTGACAGATGGTTTGATTTTTGAGTAGACAGTACTAGCCTCAAA
GCTCGATGCTGCTACCATTGTGGACTGGTGTGTTCTTGAAAAAGGTACCTATTGTCCCCA
CACAAAAAATACTTTTGATTTTACCGAGCAGAGTAATTTCCGAAGTTCTAAACTTGCTAA
GTCATTGCACACCTTTTGGACCAACAAATCTTTGTTCCCAGCTTTTCTCATGTATCGTGG
TAGTTATGGTAGGGTAGGATATAGATGGGACACCTTTGGCACATATTATCCAAATATCCT
GATCGTGTTTTAAACAATTATCAACGGTCTTTATATGTCGTGAGGATATAGTTTTATAAT
TCTTTGAATGTTCTTTGTTTACTACTAAATGAGACGAGAAAATAGAGGTAAAAGATGTCC
CATCTTCTCCCACCCTACTGTATATATAAAATATCATTTTTTGTACCCTGGCATAGTTTA
TTAAAACGTAAACGCTTGCGTGCTGAATATGTAGGTTTATTTAGCTTCCGTTCGTTGCTG
AAAATCGTGCCAGTTCATGAATTAGACAGACACTGTGACAAAATAGGCATTTCACGAGTA
ATCTGCAATAACACGTATTTAGTTGCCCAAATCGAAATTACAAAAAATAAAATTTGACTT
TCTTTTGTCACGAAGGCATTCACCTACTTAAAAAAGCATGATGTATGTGTGATGTGCAAA
CGGATGAAAGAGAATAGCCTACATAGTATAGTAGGGGTGGGAGGAGATAGGACACCTTTT
CATTCTATTTTCTCGTTCCATTTAGTAGTAAACAAAAACCATTTAAAGAAATATAAAATC
ATAGATTCACGACTTCCAGAATAGACCGTTGTAAATTATTTAAAATACGATCAGAATATT
TGGATATTGTGTACTAAAGGTACTATCTTTCCCCACCTTATACTATATCGTGTTGTGTAG
GGATATACTTACCATTACAATCGTCAACCAATGTAAGTTATCTTTAAAACGTTGTTAAGA
GTTATATATAGGGGGTTTAGGACTATATATTATAATATGCTAACTGAATTCATTCATATT
TTTTTATCAATTTCGTTCTCGTTTTTTTATTGGAATTTCGTTATCACCCTTATATACTCA
CAAAATTTCTAATTCTTAGAACGGCTCTAAAAAAGCGTTGTTAATTTAAAAAAACACGAT
TAGAAAATGTGGGATGTTATGTGCTTACGGTTCATCCGTCTTACCCCACAGTGCTGTGTA
TTTTCGTAAAAGTTTTGCCGTTGATGCCTGTAGGCCTACTTTATAAGCGACACGGAGCAG
ACAAACTTGTCAACCATGGAATTTAATTTTCATTCGCGTGGCAGGGCAACGGAAGACATA
ACTCGTGTGTTTTGTTTTCTTGAGTTTGCGTCCGCTTACGATATATATTTTACGTAATTA
GCTTTGTGGGTTATGATGACTTTTCAATTCTTTTTAATATAGCTGAGAATTTGGCCAACC
ACAAAATGCCACTGAGTTGAAACAAATGTTGTTAGCTGTCTTGCTCAAGCACACTTGCTT
AAACAATGGCAGCAAAGCCACGAGCCCTTTCCTTAGTCCAGACGTAAACGTCTAGTAGCT
ATTCACTATGGAATAGTCATAACATTTATACAATGGTTAATACACTACGTTGAAATGTAA
TTGAAAGAATCCAACATATTTTTCCCTTGCTTGGCAAGCCAACGACAGTCATTATAACAC
AGCCAATCTGTTGTATACACCCCATGCTGTCCGCTTACGAGTTACCACGTGTGTAACGTT
GTAAATGATTATATTTTATCGAGTTTTTAGTTTGGATGGTATAATTTGGACAATCCATAA
GGTGCCACTAGGTCTAAGCAATTGACGCTAAGTGTCTTGCCCAGGGAGACACAGCACGGC
AAAAAAACTTTGCAACACAGAACTTCATGTTCGTGGTAAATGTTTTGCCCAAAATATGTT
ATAGGTATCTTGCAAAAAGTATAAGTGTCTTGCCCAAAGGGCACACACGCCTGGTTCTAG
GTTCTAGGGTCTAGGGTCTAGGGCCTAGGCTATATCCCCCCAGGCGTTTTCCAACCGGCG
ATATCCCTCCCGGCTATTTTCCCGCCGGCTACTTCCCCGCCTTGACTATCCCCCCCCCGG
CTACTTAAACAGTCATAGAATTTATTCAGTCATAGCGTTTATATATTTATGGATACCCTA
TAACTAAACGTTCAAAATGTAATTCCCTTCGAACAGAGAGACCACTTTGACAGTCGTAAA
GTCTTGGAATTTTGATTTATTCGATACAAATGAAGTTTAAATAACAATGGCGTCGATATT
TATTACAAAACAATCGACCTGAAAACGTAACAATGGTGAATAATAGCGTTGTATTATTAC
GTCATCGAGGCTAAAAAACAGCTGCATTTGATCATATTAGGTTGTTTGTTACGTCATACT
ATATACCGGTTCAATAAATCGTATTCTGGACCCGTATATATATATATATATGAGGTATAT
ATACGAGTTCCGCACCATTTGTTTGGTGTGCATAGCACATAAGGACGCCAAAAGTGTATT
TATTTTCGCTGGCTACAATGTTCAAAGTGTTATGTATAAATTTGGCGAAGTTTATTACGC
CATTCAGACTCTCGGTGTTTCGAACTCGTTTTTAGATGTTTTGTTTACCATATTTAAAAC
AACTAAGAAATGGTAGAGGCAAAAGTCGCTGAACCCCTGTTATCAGTTTTGCACTTCCGT
TTATTCATAGAATGTTTTAGGATGTTATAAGAATTTCCGATCTCCGCTCGTGGTTCAAAA
TAAAGTTATTACAAGCAAGGTTCAAAATAAGGTTATTACAGTTCAACTCAACTGATTGAT
GCAATGTCGGTTTGTTTGTATGACTGCTACAGTTGAGTAATTTCCGGAAACGCTGTTATT
ATGACAGAATAAACTACGCAAAAAATGCTATTGCGTAACTGGCGTATTGCTTACGTCGCG
AAATAACAATAAATAGGCAGCTGATTTAAGTGAATCTACGTCATAGATACCCAGCTAAGT
CTAAGCACTGAAAAAACGTAATTTAAAAATGACATCAACAAGCAGAAGAGGAAGTCT
