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CIS-REGULATION

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  1. Clone 'ciem803f05' > 
  2. Clone 'cijv022p04' > 
  3. Clone 'cign064c04' > 
  4. Region 'REG00000869'

Cis-regulatory Region

Name

Ci-DDC -1363/147

Short name

n/a

Region ID

REG00000869

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Katsumi Takamura (2010-07-21)

Annotator

Clara Degos (2010-07-21)

Curator

Delphine Dauga (2011-08-16)

View position in WashU

Description

Region upstream of Ci-DDC (Dopa decarboxylase) from -1363bp to 147bp.

This region (dCi-DDC up in the paper) can drive expression in the dopaminergic neurons.

Hierarchy of Regulatory Regions

Regulated gene(s)
n/a
Construct(s) made to test this region

CONS00000833: pCi-DDC -1363/147::EGFP

Show in situ data
Overview of functional TF binding sites in this region

26,75328,262

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [26,753 / 28,262] on scaffold KhL20

Sequence found thanks to the primers used in the paper. Coordinates are based on the first exon of the KH transcript (KH.L20.60.v1.A.SL1-1).

Show sequence

Length: 1,510

CTGGAGGCGAACACGTCATAGACGGCGGGTGGTCGTTGGTTTAATGACGTAATAATCAAC
TTTCTTAATTATTATGCAATAATCTGTATCATTTAACGTCACTCATAGTATTAATCATTT
AATAAATATTATGTATAGTATGTTGTGTTTATGTTTGTGACACGGAGGTAATGGGTTCGA
GGCTCGTCGCTGCTACCATTGTGGGCGCATGTGTTCTTAGGCAAGACACTTAACAGCAAT
TACTTCAACCCAGTGGTCACTAAAAAAAACCTAAAAAACAATCACCCACAAAGTAACATA
CATAGTAACTCGTAACCTGGCACGAGGTGCTAAACCCGTGTGATAACGACTGTCGTTTTC
CGGCCACGCGAGGATAAAGTAAGTTACATTACATCCACGATAAAATAAGTTATAGTAGGG
TGGGGGGAGACGGGACACCTTTAGCACATAATTTCCAAATATCCTGGGAGTTGTGAGATA
ACGGTTTTATATTTCTTTAAAAATTCTTTGTTTATAATAAATGGGACGAGAAAATAAAAC
GAAAAGGTGTCCCATCTTCCCCCGTCCTACTACACATTTAATAATCTTATAAACGGCCCA
TCTGATGTGAACAAACGTGGTTACCAACGTTTGGTAGCAAAAGTAACAGAACATAAGTTA
CAATAAGTCGGTTAAATCGAGATTTTGGCGTAACAGCGTTCGGTGATTGTTACGTCATTT
ACACTTGTTAAAATTCGATGATTATTCAATGAATTGATCTTTATGAACAAACAAAGCTAT
CTACCAGATGCTTGTGACGTCATAAATGTAATATAAAGATCACAATGAACATTATCACGT
AATTATTTTGTTGGGGGTGATATATTGTATGTATTTATAAGCGTGTAGTTTATATACTTA
GTTATCAACGAGAATCGTCCAACAATATGGGTGCTAGATCAGGGTCAGATTCACGTTACA
TATAGTAGGGTGGGGTAAGATGGGACACCTTTAGCGCATAATATGCAAATATCCTGATCG
TGTTTTAAACAATTAACAACAGTCAAGGTTTTTCGGAAGGAGAAGGTTTTATATTTCTTT
AAATGTTCTTTGTTTACTACTAAATTGGACGAGAAAATAGAATGAAAGGGTGTCCCATCT
TCCCCCACCCTATAAAACATCACAGCTTATTATTATACGTAGTTATAATTTGACTAATGC
TTCTCAACCCGGTTAATTTTAGTTAATCATTAACATATAGAATATACGAACACGTGTTCA
AGAACAAAGAAAGGGAGTAAGCTACATTACAGCGGTAGTTAAACAAGTTATACGCAAAAC
TCTTTAGTATTATTCATAACTATTATCTCTTCGTATACGGTAGCTATAGGACTAAATTAA
TTAAAACAGCGAAGAGAAAGAAATTACCAGCAAAACGACAGTTGTTAAAACAACGAAAAG
AATCCGCTGCAAAAATGACGGAGGACAATAACGTCGAAGTACCCAGGCTGGGAATCGAAC
CCGAAGCCTT

Reference(s)

Takamura et al. (2010). Neural map of the larval central nervous system in the ascidian Ciona intestinalis. Zool. Sci. 27(2):191-203

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