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CIS-REGULATION

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  1. Region 'REG00000916' > 
  2. Region 'REG00000908' > 
  3. Transcript 'KH2012:KH.C8.272.v6....' > 
  4. Region 'REG00001537' > 
  5. Region 'REG00000903'

Cis-regulatory Region

Name

Ci-DllB -5000/9

Short name

n/a

Region ID

REG00000903

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Steven Q. Irvine (2011-08-22)

Annotator

Delphine Dauga (2011-08-22)

Curator

Delphine Dauga (2011-08-22)

View position in WashU

Description

This region draives expression throughout the epidermis.

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C7.243 (DLX1; DLX2; DLX5)

Construct(s) made to test this region

CONS00000868: pCi-DllB -5000/9::LacZ

Show in situ data
Overview of functional TF binding sites in this region

00

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 SOX n/a agacaatggt [-4,736 / -4,727]
2 ZnF_(nuclear receptor) n/a gagcgacccc [-4,694 / -4,685]
3 SOX n/a gaataat [-4,674 / -4,668]
4 ZnF_(C2H2) n/a cacctc [-4,652 / -4,647]
5 ZnF_(GATA) n/a gataa [-4,567 / -4,563]
6 SOX n/a attgttt [-4,532 / -4,526]
7 ZnF_(C2H2) n/a gaggtgac [-4,413 / -4,406]
8 SOX n/a acaatgttt [-4,407 / -4,399]

Sequence

Aniseed Coordinates: [0 / 0] on scaffold KhC7

Sequence from JGI V1.0 found with the sequence in Figure S1.

Show sequence

Length: 5,008


TATGTTACAGCAGACTAATACGCCATACCATGAATTGAAACGGAATGCACGTTATAGGTT
AGTCGAATTTTACTTTAATATGTTGAGATGCAATAACCTTTCTCTATACCTGCGGGGTAC
TGTTTTCTACAGCTATTGCGAGTACTGTGTTTACAGCAAGTACTTGGGAGTACGAAATAA
TTGTACCTTCACCTGTCGGTGATCTGACTTTATGAGGTGACTGAATTAGTAAGTCTCATT
ATAAAGCTGGCACTCGTGGAGAAGAGACAATGGTTCTTTTAATCCGGGCTCACAAGGCTA
CAATACGAGCGACCCCTTCGAAAACCGAATAATACCCGAGGCCAAATTCACCTCCCCGAC
TTGGAGTTTTTGAGAGTCGGGCTTGTGTTGGCTGCAGCCTACCGAGAAATGCATTGTTTT
TTCGACGCGCTACGATAAGAAGTCATTGTCTTTCGCTCGAGCACGTGCATTGTTTTCATA
GCGCTGCTTTTGTTGTGCACGAGTGTCGTCTCTTCGGCTTTATTCAAGTGAGTTTGTTCT
ATTGAGTTTGCATTTTAGATCACTGTAATGTTATGTTGTCGTAGCTGGAGGTGACAATGT
TTGTGTTTGTTTATTATATTCGCATGTTTAACCTCAAGCACCAATACAAAACATTGTTTG
TTAAACTAATCACAATTGTTGTTAAGACTATACGTTTATATTGTACATTAGACAGGAACA
AATACATATAATAATATTAGGCTTACGAGTAAGTATCATAATAGTAACATGAATATTTTA
CCAATGTGGTTTACTAAGATATTTTGCCTTTTTTCGTACATCAAAGCTTCCGATGGTCTA
GCAATATGGAATGACTGTTTTGTTATAACGTAAACTTAAATGCGACATGTTCATTCCTTC
TTCACATTTAGTAGTAAGAAAAGAATATTTACAGATTATATAAACGTATCATCACGGCTT
AACAAGTCTGTTGGTAATTGTTCAAAACACGAAAAGAAATTTGTAATTTAGACTAACGGT
ACCATCTTATACCCCATACTATATAATACATACTCGTTCTAAGTCACAATATATTTGCAT
TTGTGTATAACCGTATTCGTTTACTTTTGTTAGATACCCAATGAATTGGCATTGTAGTTT
AAATACGATTGATAATGTTGTTTTGAAGATGTGAGTTAGAACTATGCTCAGAAAATGCTG
ACATCAAACCGCACTTGCGGATTCGAGCAACCAATGAATGAATGAAAGCAATGGAAATTG
TGAGTCCATTTGAAAAAACATTTTATTTCTGTCTATATTGAATATAGTATCGTATATATA
TATATATACATGTTTTCCGATAAAGTTATAAAGATTTTACTCTAAAATAGCGTTTTAAAT
TGTTAAAATACAATTAGAAAATATGGTATATTAAAGGGTGGGGGAAGATGGGACACGATT
TTATTTTGATTTCTTGTCACATTTTGTAGAATCTTAAAATCTTATCCTCATAACTCCCAT
AGGTCCATGTTAATTGTTCAAAACACGATTAGGTTATTTAGATAACATGTGTTAAATGTG
TCCCATCTTCCCCCAACCTATTATATATTATACGACGGTATACATTTGCCCCACACTACT
ATATGTAAGTTTTATACAATGTCGCGTGTCGTGAAATATCTTCAGCCCGAATTCTATGCT
TTTTTAATCACTAGTCAGGTCGGTCAGTGCAGGGTTAATGGGCGGGTATGGGTGTTGTCA
TTGTTGCAGCGAAAACCCAGTTTTTCGGCGACGCTGAGTCTAGGATTAAAAGGCGGGATG
CGAATTTGTAATCTTACTGTTCGATTCACCTGTTCTGTGACGTCACAGCGCGTACCTCTT
ATGTGCGTCATAATAAGATTTATTAAATCACAGCTTCGTGTCGTAACTGGATCAATCCCG
TCTGTTACATTCAAGTAAAATGAGCGACACCGTTAATACACATTTATAGGCCTTACAGTT
TTAGTGTGACTACAATGTTACCCAAACGGGACTAATTAGTGATTAATTGCGCTGTTATAC
GGAGCCCTACATTAGAAATATGCACCATATATTCCTAACTGTTGGTATATATAAACCAAT
GTTAATATATGTTCATATAGTAACATTTGTATAAACTGTCTTTTGTATTTAAAACTTCAC
GACTGGCAGATTTGTATTGAAATTTCGTTCGGAAAAGTTCTTAGTGTTCACAATGTGCAG
CAATATTGAAACCAAACATTATTGAAAATATGACACGACTTGGCACAGTAAACAACCCAT
ATTAGAAAAATCAATATTTTGTTTCAAAATTTCAGTCAGAACACCCACTGCAACCCGTTT
GTAATATCTACTAGTTCATTGCACTTCGTTAATTAGGGGGCATATGCACTTTGTCTTATT
TACATTCAAGTGGGAAATGAAACAACGTTTTCAATCAAGTATTTATCAGTATGTACATTC
GCATTAATAGTTGTTAGTTATCATATCTGTACATGGTGGCATTCAAAGCACAGTGTTAGT
TTTACAAGCTATTTGCTTTATGTACAAGTATATGGAGAAATGTACAATTTCTACGAAAAT
GTGCTCATTTAAGTAACAATTTCCCGTCTATGGCTTATTTACTGCGTTTAAAACGCGTTG
TGATTTTATGCTAAGCAGCGTATAGTTATTTACAGCTATAAGTGTGATGTACAAAGCTCC
GCTAGATGCCGCTAACAAGCCTCTGTGGCAAACAAGCGGTGCATAGTTATGACTGAGCAA
AGTGATCAAAAGTGCAGAAGCGCAAGATATAACGTCAAAGCAGAAGCGAATCATTTAACT
GTTAGAATGTGATACACGGCATATGGTGTTAGTTTGGCGTTAACTAAAGCAAAGTTAGAG
CTGGTGTTTCTATTTGTTTTTCCATCATCAGACAACTAGTTCGTTAATTTTGCGTCTTGT
TGATTGTAGTTGATCTGTGAAGAGAATTTCGAATTATTTCAGGCTTACGATGAAATACGA
AAATAGTTGAATGAAAACAAAATGCAGTATAATGTAAATGGTAAACAAACATTCATTAAT
TAAACGTGAAAATAATAATAACTACCACCATCACCTACCATGCTCGTCCACCACCGCACG
ATGGCGCTCTGGAGACAGACGTGAGTACACAGCACTTACGCATTCGAAACACAGAATGGT
CGAATTATGATAACGTCCACCCTACATTTCCGAATACGCAGGCGCTTGTAGAACTTATAC
GTTAATTTGTGGCAATATAGGTTATTTGCACAGAGTAAAAATGTCAGAATATACGTATAT
ATACATAAACCAAATACAAGCCAAAAATATGGTAACCAAAATAGGTTATATACGTGATAA
ATTATAAATCAACGCTGCGAAAACCCATGCACCCGTGTTAATTATATATCGACACCATAT
TAAAAAACGCGAAACGCATAGACGACCCGGACCCCTTTAGTTTGCTACATCAGCTAGAGC
TAGCTGTTCCAGCTAACCTAGTAGATGAAGCAGTCTATAGTGGCTTATAGCAGTCAACTC
AGCTTTAACATAAGCCGCACTGAAGATTTGCATTTAAGGTGTAGTAGGTGGGGGAAGATG
GGACACCTTTTCATTTTATTTTCTCGTCCCATTTGGTAGTGAACAAAAAAACATTAAAGA
ATTATAAAACCGCATCCTCACGACTCCAACAGACCGTTCCGGATATTTGAATACAATGTC
CTAAATGTGTCCCGTTTCCCCCAACTCTACTTTATATATAGCGGTACCCATATTTTACAA
TAGAAAATGATGTACTTCAGTGCGTCAAATGTTCAAAAACCAGTTTTCTTATAACATTAT
AATATATAAGCCCACCACCAACGCTATTCTACCAAGTTAAGCCAAGCATGCAGAAGCCAC
TAGCTTGTTTTACCTATACGAGCGTTGTTATTATTGCACGACTGTGCTTACCTAGCAACC
AGTCAACAGTAAACGTACGTAACTGCTTCTCTGTACCGCATCCTCGCTATATAGACATAT
GACTCATTTTAAGGTTTAGCCCAAATTGGAAATTTAAGTGTATCGCAAGGAATTTGACTA
TTTCAGGTTTGCGATGACCCATTGTGCGATCATTGTGACGTCACTTTCGGGTTATTACGT
CATCATATAAAACGTACCGTACACAACAAAACGTTCGAATAAATGAGCAATTTTGAACAA
CTGAGGCATAAAATTTGTTAGAATAAAATGTTAATGCCGAGTTCTTCAAAATGACTCATT
TATTCGTATTCACCAACTACCGTGCTATAAAACTCACTTGTGTGTTGTCGGTTAGAGGAC
CTTAGATATTGTAATTACGTTTATGCTTGTTATATACACCTTAACGTTTTATAAGGTGGT
CAAAAACCGCAGAACGTCAGACCTATCATTTTTTTGCATCACATCACGTGACCTATAGTC
ACGTGATACTATTCGAAAAGCTCGAAAATGTCATCACTGCGTGCGCGGTCAAGCGAGACG
GGCACTCCCTGGCACCAATGGTTGCCGTTAAAACACCGGAAACTACGTCATAATCTTACT
TGGTCAAGTTCAACCATATCATGTGTCCTTCCTGCTTAGAAAATAATTCGTTTCCCGAAA
TAAATATGACAAAAACTTGTTTTAAGGTTAGTTTTCCGCGGATCAGACCAAGCTGTTGGA
TTAAAATCACCGCGAAGTGTCACGTGTTTGTTACGCATGACATCGCTTAAATATGAAATG
GTTTCGTCATCATAAGTAAAACAAAGTTACGTTTTTTAAATTATGATTTTTTTGACTTTC
TTACCTTGAATTTGCATTTTATTTTTGGGTTTTAATCTTCAATAAATTCGGTTACGGTGA
TACACTGAAATGGAAAAAATAAAGTCAAAACGATGACTAAAATTACATACATATGTGATA
CTAAATTTAGGAATTTGTTCATGATTTATTAAAACTATTTCTGGGGTAAAGCCATGTCCC
CTTGCATGCTTCCTCCTCCTTATCCAAA

Reference(s)

Irvine et al. (2011). Expression of the Distalless-B gene in Ciona is regulated by a pan-ectodermal enhancer module. Dev. Biol. 353(2):432-9

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