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CIS-REGULATION

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  1. Region 'REG00000904'

Cis-regulatory Region

Name

Ci-DllB -2400/9

Short name

n/a

Region ID

REG00000904

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Steven Q. Irvine (2011-08-22)

Annotator

Delphine Dauga (2011-08-22)

Curator

Delphine Dauga (2011-08-22)

View position in WashU

Description

This regiona drives expression throughout the epidermis.


Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-DllB -5000/9 by deletion

Regulated gene(s)

KH2012:KH.C7.243 (DLX1; DLX2; DLX5)

Construct(s) made to test this region

CONS00000869: pCi-DllB -2400/9::LacZ

Show in situ data
Overview of functional TF binding sites in this region

00

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 SOX n/a agacaatggt [-2,136 / -2,127]
2 ZnF_(nuclear receptor) n/a gagcgacccc [-2,094 / -2,085]
3 SOX n/a gaataat [-2,074 / -2,068]
4 ZnF_(C2H2) n/a cacctc [-2,052 / -2,047]
5 ZnF_(GATA) n/a gataa [-1,967 / -1,963]
6 SOX n/a attgttt [-1,932 / -1,926]
7 ZnF_(C2H2) n/a gaggtgac [-1,813 / -1,806]
8 SOX n/a acaatgttt [-1,807 / -1,799]

Sequence

Aniseed Coordinates: [0 / 0] on scaffold KhC7

Sequence from JGI V1.0 found with the sequence in Figure S1.

Show sequence

Length: 2,408


TATGTTACAGCAGACTAATACGCCATACCATGAATTGAAACGGAATGCACGTTATAGGTT
AGTCGAATTTTACTTTAATATGTTGAGATGCAATAACCTTTCTCTATACCTGCGGGGTAC
TGTTTTCTACAGCTATTGCGAGTACTGTGTTTACAGCAAGTACTTGGGAGTACGAAATAA
TTGTACCTTCACCTGTCGGTGATCTGACTTTATGAGGTGACTGAATTAGTAAGTCTCATT
ATAAAGCTGGCACTCGTGGAGAAGAGACAATGGTTCTTTTAATCCGGGCTCACAAGGCTA
CAATACGAGCGACCCCTTCGAAAACCGAATAATACCCGAGGCCAAATTCACCTCCCCGAC
TTGGAGTTTTTGAGAGTCGGGCTTGTGTTGGCTGCAGCCTACCGAGAAATGCATTGTTTT
TTCGACGCGCTACGATAAGAAGTCATTGTCTTTCGCTCGAGCACGTGCATTGTTTTCATA
GCGCTGCTTTTGTTGTGCACGAGTGTCGTCTCTTCGGCTTTATTCAAGTGAGTTTGTTCT
ATTGAGTTTGCATTTTAGATCACTGTAATGTTATGTTGTCGTAGCTGGAGGTGACAATGT
TTGTGTTTGTTTATTATATTCGCATGTTTAACCTCAAGCACCAATACAAAACATTGTTTG
TTAAACTAATCACAATTGTTGTTAAGACTATACGTTTATATTGTACATTAGACAGGAACA
AATACATATAATAATATTAGGCTTACGAGTAAGTATCATAATAGTAACATGAATATTTTA
CCAATGTGGTTTACTAAGATATTTTGCCTTTTTTCGTACATCAAAGCTTCCGATGGTCTA
GCAATATGGAATGACTGTTTTGTTATAACGTAAACTTAAATGCGACATGTTCATTCCTTC
TTCACATTTAGTAGTAAGAAAAGAATATTTACAGATTATATAAACGTATCATCACGGCTT
AACAAGTCTGTTGGTAATTGTTCAAAACACGAAAAGAAATTTGTAATTTAGACTAACGGT
ACCATCTTATACCCCATACTATATAATACATACTCGTTCTAAGTCACAATATATTTGCAT
TTGTGTATAACCGTATTCGTTTACTTTTGTTAGATACCCAATGAATTGGCATTGTAGTTT
AAATACGATTGATAATGTTGTTTTGAAGATGTGAGTTAGAACTATGCTCAGAAAATGCTG
ACATCAAACCGCACTTGCGGATTCGAGCAACCAATGAATGAATGAAAGCAATGGAAATTG
TGAGTCCATTTGAAAAAACATTTTATTTCTGTCTATATTGAATATAGTATCGTATATATA
TATATATACATGTTTTCCGATAAAGTTATAAAGATTTTACTCTAAAATAGCGTTTTAAAT
TGTTAAAATACAATTAGAAAATATGGTATATTAAAGGGTGGGGGAAGATGGGACACGATT
TTATTTTGATTTCTTGTCACATTTTGTAGAATCTTAAAATCTTATCCTCATAACTCCCAT
AGGTCCATGTTAATTGTTCAAAACACGATTAGGTTATTTAGATAACATGTGTTAAATGTG
TCCCATCTTCCCCCAACCTATTATATATTATACGACGGTATACATTTGCCCCACACTACT
ATATGTAAGTTTTATACAATGTCGCGTGTCGTGAAATATCTTCAGCCCGAATTCTATGCT
TTTTTAATCACTAGTCAGGTCGGTCAGTGCAGGGTTAATGGGCGGGTATGGGTGTTGTCA
TTGTTGCAGCGAAAACCCAGTTTTTCGGCGACGCTGAGTCTAGGATTAAAAGGCGGGATG
CGAATTTGTAATCTTACTGTTCGATTCACCTGTTCTGTGACGTCACAGCGCGTACCTCTT
ATGTGCGTCATAATAAGATTTATTAAATCACAGCTTCGTGTCGTAACTGGATCAATCCCG
TCTGTTACATTCAAGTAAAATGAGCGACACCGTTAATACACATTTATAGGCCTTACAGTT
TTAGTGTGACTACAATGTTACCCAAACGGGACTAATTAGTGATTAATTGCGCTGTTATAC
GGAGCCCTACATTAGAAATATGCACCATATATTCCTAACTGTTGGTATATATAAACCAAT
GTTAATATATGTTCATATAGTAACATTTGTATAAACTGTCTTTTGTATTTAAAACTTCAC
GACTGGCAGATTTGTATTGAAATTTCGTTCGGAAAAGTTCTTAGTGTTCACAATGTGCAG
CAATATTGAAACCAAACATTATTGAAAATATGACACGACTTGGCACAGTAAACAACCCAT
ATTAGAAAAATCAATATTTTGTTTCAAAATTTCAGTCAGAACACCCACTGCAACCCGTTT
GTAATATCTACTAGTTCATTGCACTTCGTTAATTAGGGGGCATATGCACTTTGTCTTATT
TACATTCA

Reference(s)

Irvine et al. (2011). Expression of the Distalless-B gene in Ciona is regulated by a pan-ectodermal enhancer module. Dev. Biol. 353(2):432-9

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