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CIS-REGULATION

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  1. Transcript 'KH2012:KH.C8.717.v1....' > 
  2. Clone 'cibd057e07' > 
  3. Clone 'cibd043e22' > 
  4. Clone 'cijv036j09' > 
  5. Region 'REG00000905'

Cis-regulatory Region

Name

Ci-DllB -1500/9

Short name

n/a

Region ID

REG00000905

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Steven Q. Irvine (2011-08-22)

Annotator

Delphine Dauga (2011-08-22)

Curator

Delphine Dauga (2011-08-22)

View position in WashU

Description

This regiona drives expression throughout the epidermis.


Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-DllB -2400/9 by deletion

Regulated gene(s)

KH2012:KH.C7.243 (DLX1; DLX2; DLX5)

Construct(s) made to test this region

CONS00000870: pCi-DllB -1500/9::Lacz

Show in situ data
Overview of functional TF binding sites in this region

00

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 SOX n/a agacaatggt [-1,236 / -1,227]
2 ZnF_(nuclear receptor) n/a gagcgacccc [-1,194 / -1,185]
3 SOX n/a gaataat [-1,174 / -1,168]
4 ZnF_(C2H2) n/a cacctc [-1,152 / -1,147]
5 ZnF_(GATA) n/a gataa [-1,067 / -1,063]
6 SOX n/a attgttt [-1,032 / -1,026]
7 ZnF_(C2H2) n/a gaggtgac [-913 / -906]
8 SOX n/a acaatgttt [-907 / -899]

Sequence

Aniseed Coordinates: [0 / 0] on scaffold KhC7

Sequence from JGI V1.0 found with the sequence in Figure S1.

Show sequence

Length: 1,508


TATGTTACAGCAGACTAATACGCCATACCATGAATTGAAACGGAATGCACGTTATAGGTT
AGTCGAATTTTACTTTAATATGTTGAGATGCAATAACCTTTCTCTATACCTGCGGGGTAC
TGTTTTCTACAGCTATTGCGAGTACTGTGTTTACAGCAAGTACTTGGGAGTACGAAATAA
TTGTACCTTCACCTGTCGGTGATCTGACTTTATGAGGTGACTGAATTAGTAAGTCTCATT
ATAAAGCTGGCACTCGTGGAGAAGAGACAATGGTTCTTTTAATCCGGGCTCACAAGGCTA
CAATACGAGCGACCCCTTCGAAAACCGAATAATACCCGAGGCCAAATTCACCTCCCCGAC
TTGGAGTTTTTGAGAGTCGGGCTTGTGTTGGCTGCAGCCTACCGAGAAATGCATTGTTTT
TTCGACGCGCTACGATAAGAAGTCATTGTCTTTCGCTCGAGCACGTGCATTGTTTTCATA
GCGCTGCTTTTGTTGTGCACGAGTGTCGTCTCTTCGGCTTTATTCAAGTGAGTTTGTTCT
ATTGAGTTTGCATTTTAGATCACTGTAATGTTATGTTGTCGTAGCTGGAGGTGACAATGT
TTGTGTTTGTTTATTATATTCGCATGTTTAACCTCAAGCACCAATACAAAACATTGTTTG
TTAAACTAATCACAATTGTTGTTAAGACTATACGTTTATATTGTACATTAGACAGGAACA
AATACATATAATAATATTAGGCTTACGAGTAAGTATCATAATAGTAACATGAATATTTTA
CCAATGTGGTTTACTAAGATATTTTGCCTTTTTTCGTACATCAAAGCTTCCGATGGTCTA
GCAATATGGAATGACTGTTTTGTTATAACGTAAACTTAAATGCGACATGTTCATTCCTTC
TTCACATTTAGTAGTAAGAAAAGAATATTTACAGATTATATAAACGTATCATCACGGCTT
AACAAGTCTGTTGGTAATTGTTCAAAACACGAAAAGAAATTTGTAATTTAGACTAACGGT
ACCATCTTATACCCCATACTATATAATACATACTCGTTCTAAGTCACAATATATTTGCAT
TTGTGTATAACCGTATTCGTTTACTTTTGTTAGATACCCAATGAATTGGCATTGTAGTTT
AAATACGATTGATAATGTTGTTTTGAAGATGTGAGTTAGAACTATGCTCAGAAAATGCTG
ACATCAAACCGCACTTGCGGATTCGAGCAACCAATGAATGAATGAAAGCAATGGAAATTG
TGAGTCCATTTGAAAAAACATTTTATTTCTGTCTATATTGAATATAGTATCGTATATATA
TATATATACATGTTTTCCGATAAAGTTATAAAGATTTTACTCTAAAATAGCGTTTTAAAT
TGTTAAAATACAATTAGAAAATATGGTATATTAAAGGGTGGGGGAAGATGGGACACGATT
TTATTTTGATTTCTTGTCACATTTTGTAGAATCTTAAAATCTTATCCTCATAACTCCCAT
AGGTCCAT

Reference(s)

Irvine et al. (2011). Expression of the Distalless-B gene in Ciona is regulated by a pan-ectodermal enhancer module. Dev. Biol. 353(2):432-9

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