Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000565' > 
  2. Transcript 'Cisavi.CG.ENS81.R14....' > 
  3. Transcript 'KH2012:KH.S742.2.v2....' > 
  4. Region 'REG00001576' > 
  5. Region 'REG00001023'

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C4.1881531-1882173

Short name

Ci-TgfNA(-599/+44)

Region ID

REG00001023

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Fujiwara team (2015-08-29)

Annotator

Shigeki Fujiwara (2015-08-29)

Curator

Delphine Dauga (2018-04-17)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2013:KH.C4.1881331-1882173 by deletion

Regulated gene(s)

KH2012:KH.C4.547 (BMP2; BMP4; GDF5)

Construct(s) made to test this region

CONS00000992: pCirobu.REG.KH2013:KH.C4.1881531-1882173>NLSLacZ

Show in situ data
Overview of functional TF binding sites in this region

1,881,5311,882,173

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,881,531 / 1,882,173] on scaffold KhC4

The regulatory region was obtained from Kyoto individual.

Show sequence

Length: 643

TACTTTTAGTGCGCGTTACAAAATAGAGTGGGTTAGGGTAAAAATGTTTTTATTTTCGTT
CTCTTTTATCGTTCTATTAATCTATTTGGTAATAAACAAAGAATATTACAGATTTAGTAG
ATTATGGGAAGATGGGACACATTTGCATTCTATTTTCTCGTTCCATTTGGTAGTAAACAA
GGAATATGAGATACTATGCGCTAACACTATACATCTTAACCCATAGTAGCATAGCATGGA
TTTTTATTGTTTCTTGTTCCCTCCGTGCCGGGAATTGTTATCAGTCAAAACAAACGCAAC
GAATCGGCCAAAATCTGCTTGTTCACATGCAAAACTGTCAACACAAAAGTGACAATTACC
GAGTTTACACGCATGTAAAATTATTGTAAGAAACCCGATAAGGAGACCTACTTTATCGGC
CCCTTATCGTGGAGATTTGCAACACGCTCTAGCGTTTCAGCCGAAAGCTGTAAGCTTGTA
TAGTGTTATTGCTAATCACTGTTAGTTGTTGTTGTTGCTGAAAAATGAAGAAGTTATCAG
CAAAAAAAGTTGAGTTAGTGTTGGCAGTTTAATAATACTGAGCCGTTGAAAGTGTTGGGT
TAAAGATGCATCGAATACTGCTAGCTGGTTTGTGTTTATTCGT

Reference(s)

Horikawa et al. (2013). Transcriptional regulation in the early ectodermal lineage of ascidian embryos. Dev. Growth Differ. 55(9):776-85

Back to Top