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CIS-REGULATION

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  1. Transcript 'KH2012:KH.L107.7.v1....' > 
  2. Region 'REG00000386' > 
  3. EST 'FF726896.1' > 
  4. Region 'REG00000586' > 
  5. Region 'REG00001024'

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C4.1881731-1882173

Short name

Ci-TgfNA(-399/+44)

Region ID

REG00001024

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Fujiwara team (2015-08-29)

Annotator

Shigeki Fujiwara (2015-08-29)

Curator

Delphine Dauga (2018-04-17)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2013:KH.C4.1881531-1882173 by deletion

Regulated gene(s)

KH2012:KH.C4.547 (BMP2; BMP4; GDF5)

Construct(s) made to test this region

CONS00000993: pCirobu.REG.KH2013:KH.C4.1881731-1882173>NLSLacZ

Show in situ data
Overview of functional TF binding sites in this region

1,881,7311,882,173

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,881,731 / 1,882,173] on scaffold KhC4

The regulatory region was obtained from Kyoto individual.

Show sequence

Length: 443

CTAACACTATACATCTTAACCCATAGTAGCATAGCATGGATTTTTATTGTTTCTTGTTCC
CTCCGTGCCGGGAATTGTTATCAGTCAAAACAAACGCAACGAATCGGCCAAAATCTGCTT
GTTCACATGCAAAACTGTCAACACAAAAGTGACAATTACCGAGTTTACACGCATGTAAAA
TTATTGTAAGAAACCCGATAAGGAGACCTACTTTATCGGCCCCTTATCGTGGAGATTTGC
AACACGCTCTAGCGTTTCAGCCGAAAGCTGTAAGCTTGTATAGTGTTATTGCTAATCACT
GTTAGTTGTTGTTGTTGCTGAAAAATGAAGAAGTTATCAGCAAAAAAAGTTGAGTTAGTG
TTGGCAGTTTAATAATACTGAGCCGTTGAAAGTGTTGGGTTAAAGATGCATCGAATACTG
CTAGCTGGTTTGTGTTTATTCGT

Reference(s)

Horikawa et al. (2013). Transcriptional regulation in the early ectodermal lineage of ascidian embryos. Dev. Growth Differ. 55(9):776-85

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