Aniseed - Cis-regulation

Cis-regulatory Region

Name

CibpFoxAa

Short name

Cirobu.FoxAa basal promoter

Region ID

REG00001035

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(RNApol_II_core_promoter)

Author

Damien Gailly (2016-07-28)

Annotator

Alicia Madgwick (2016-07-28)

Curator

Marion Gueroult-Bellone (2023-06-22)

View position in WashU

Description

Basal promoter of Ci-FoxAa used to drive expression in Lemaire lab 2016 (DG and AM).

Hierarchy of Regulatory Regions

CibpFoxAa REG00001035 [ regulatory_region (RNApol_II_core_promoter) ]

Regulated gene(s)

KH2012:KH.C11.313 (FOXA1; FOXA2; FOXA3)

Construct(s) made to test this region

n/a

Overview of functional TF binding sites in this region

4,404,4414,404,868

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [4,404,441 / 4,404,868] on scaffold KhC11

Show sequence

Length: 428

TCTTTGACCAATAATTTCGCCGCCATTTTTTTCTTAAAATATCACGGCCAGTTTTTAACA
AGTTATTTTTCTAGCTTTCTATTTGAAATATTATACACAACTGCTGCTGTAATTTCTGAG
AAAGCTTTTGAAATCGGATTACTTTTGCAAGTACAAAAATGATGTTGTCGTCTCCACCGT
CAAAGTACCAACCCTTCCAACAGTCTTATGCTACTGGTATGAACAATATGACCAACGGTA
TGCAGCCTTCATACGTCAACCAGATGAACCCAATGTCGCTTACAGCTGCTGGCAACCAGG
TCGGATTTAACCAAGCTTTACCGCAAGGATATGGCGGCGTATCGTTTAATGGTATGGGCA
CAAGTGCGATGAACGGCCACTCACCCCACAGCGTTCAAATTGCTGCCGCGGCCGCTGCTG
CTGTCGGA

Reference(s)

Madgwick et al. (2019). Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians. Dev. Biol. 448(2):71-87