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CIS-REGULATION

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  1. Region 'REG00001593' > 
  2. Region 'REG00000380' > 
  3. Transcript 'KH2012:KH.C10.338.v1...' > 
  4. Region 'REG00000040' > 
  5. Region 'REG00001128'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.C2:1982640-1982969|Admp

Short name

Admp (-323pb)

Region ID

REG00001128

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Izumi Oda-Ishii (2017-01-31)

Annotator

Marion Gueroult-Bellone (2017-09-03)

Curator

Marion Gueroult-Bellone (2018-03-13)

View position in WashU

Description

323pb upstream Admp TSS are sufficient for driving reporter expression specifically in the posterior vegetal hemisphere.

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2012.C2:1982340-1982969|Admp by deletion

Regulated gene(s)

KH2012:KH.C2.421 (BMP2; BMP3; GDF6)

Construct(s) made to test this region

CONS00001097: p.Cirobu.REG.KH2012.C2:1982640-1982969>GFP

Show in situ data
Overview of functional TF binding sites in this region

1,982,6401,982,969

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,982,640 / 1,982,969] on scaffold KhC2

Sequence retrieved via the tool BLAST of Aniseed, thanks to the supporting information of the article (S5 Fig.)

Show sequence

Length: 330

tcttcgagaaaagtgcacttaccgattcaacttttcgatcgcattttcgccagagctttc
tgagtgcaggtgtatggtcgactggtttggtttttgaggacccctagagtgcttaccacc
gcaacactgataacgtgttatctacggtttacggacaactgctgcgctgctcgttctctc
ggtctacgctcgtcgtatgtttgcgaattttcgtacatccggagatcaaatatcagcggg
tgattgaatgatcggtccgatttaagtgacaggacttcaccgacagcacagtagataagc
ggagcagaagaatttggacactcACATTGA

Reference(s)

Oda-Ishii et al. (2016). A Maternal System Initiating the Zygotic Developmental Program through Combinatorial Repression in the Ascidian Embryo. PLoS Genet. 12(5):e1006045

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