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CIS-REGULATION

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  1. Transcript 'KH2012:KH.C14.231.v2...' > 
  2. Transcript 'KH2012:KH.C14.231.v1...' > 
  3. Transcript 'KH2012:KH.C14.231.v5...' > 
  4. Clone 'AHC0AAA26YK18' > 
  5. Region 'REG00001158'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.C5:4201966-4206944.Deleted_4204077-4203951

Short name

Ci-cdc25(-4976+3)_deletionCRM1,2

Region ID

REG00001158

Status

Curated

Origin

engineered region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yosuke Ogura ()

Annotator

Marion Gueroult-Bellone (2017-02-17)

Curator

Delphine Dauga (2017-05-24)

View position in WashU

Description

The cis-regulatory modules CRM1 and CRM2 (as defined by Ogura and Sasakura, 2016) were deleted. Region called -4976 Delta 1984-2109 in the article.

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2012.C5:4201966-4206944 by deletion

Regulated gene(s)

KH2012:KH.C5.12 (CDC25A; CDC25B; CDC25C)

Construct(s) made to test this region

CONS00001132: pSP.Cirobu.REG.KH2012.C5:4201966-4206944.Deleted_4204077-4203951:prCirobu.bpForkhead>Kaede

Show in situ data
Overview of functional TF binding sites in this region

4,201,9664,206,944

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,201,966 / 4,206,944] on scaffold KhC5

5kpb region located upstream the start codon of cdc25 (KH5.12). Cis regulatory modules CRM1 and CRM2 (as defined by Ogura and Sasakura, 2016) are missing.

Show sequence

Length: 4,979

catattaaagacaggtgctgaagattgaccacaagtgtataacacccgctagcttacaac
agagtaagctctcaagataccgtatgtctaaaacgcaattagctacttcggatgtcaaat
aacctgaaattctgcaaaagaaaacagtttgcttactcgatcggcgaagatactctgcta
atccacgagatatcggcttatgacaaacgcccataagttacatcgccgatatgacccaat
tccatcggcaatacgaccactatgttattgcggtctttactaagtcataatccaacttta
taacgcttgcgtcgcagaacaactgttgcaataagctccaatggccacaccatatgttac
gctcgaggtataggaggccttttgagtatatacccgacattctaatactactcactcaat
ataatacacaatacaacgtatgtatgtatgctgcatggtactctcttaatcaacacaata
aaatgacatatccaaaaccccaataatactatagccagctaactagtatacgactcttag
attctagttattgtgcaatgaaccgtctagtatcgtcagttaaacaaccatgtaatagca
tagtctctttctctcagtgctcgaggagcattccactttagttttaacgcactacaaact
actatacatacgcaatttctttcagttaccaatacgctatagtcgctatataacgtggta
gcctcacgctacagttatgtgctttagatgtgaatacatccgcctgtcgatactggccac
ttgtcctatatacattggatacggcttatcggcacaaagtaaacaataacaatgcgtagt
atgtggtctgcaatgcgctgctctgggtatactggaacggtactacattgttgtacagta
atgataaagttttacgtagaccagtaactacctagaggtagctgaataggtgaatactgt
ttgactcttatgcttctgtctagtaatatataagagccgaagtctgtctcgctgcttaat
acgcgctcaaactgaaatcccaggcaagatgtctacgattaggaagttgagaaaaaaggc
ccaagagctatgagctaattcccttgcattgtccggtttggacgctaattgatattctga
aggcagctcatgtaaactggtttacgaagcatcttacaatccggccaagctgggacacag
cgtgcgagtgactacctttacctgtgacgcgattaccaagcgagagattaacctttttcc
tttggcggtgagtcgaaaaggaaacataccgctgggctctcgctcggtagcgagtttgct
gctggcaagtaaatcctacgaccaacaatactagcgcaccttggcccggctggatgcagt
caggatgtctcggttggctgtttgtacgctatgcgggcactatggatgcacgcaagtgga
ttaacgggtgggattcttgcttaatatatccgaagttgggaactagttacggattaggca
gcgagtcggttctaatttttatagaaaagtttgctccgcggagatatttacgagaagcac
cacatatatattgacgacgtatttttgcttactactactgtcctactaacgttgcacgaa
aaacacacaactagtcttcctttaactatgcaggcagaacatgagtgaatactagattag
ttttaattaacgaatcggtcactatcctgcactgttgcatattctccaattacatggaat
attgctaataatgcatgtataccgaatcgatctactaacaaattgaactcagctggttgt
gcgctgcatgtgcagttgaatgaatggtgccctgcatcgaaccgcagctgctattttaag
agtgctggtgcagtcgcctttttctcgctttactacaggttcagtgtgttttggtcgtcc
actgataagtagcgaaggccgaagcgtcgcggttcgggccccgaggcacgcactattcta
gcgtcat-----------------------------------------------------
------------------------------------------------------------
-------------tgtatatgctgaacagtaaaatacaagagcagaaccacggcgacaga
tttctgccacttaaagaaaacttgatatttttttaagactctcactgcagtaaaacatat
gtcgcccaactgccaacgccacctacttaacatcagcgctaaccaaagggcggtaagacc
gttacagcacgtcggaatctatacgcgtggctataagatatttcaaatatagccaactcg
cataaaaatatacttgcgtatatctcatggaaaatatttaaaccatgcgtttcaaataac
caaagaaacaaactcgacgtagctttacaaaatcgtagtaccgataaatcgtatataggc
ctataaaccaattatgatgtccaagcgggtcgttgttttccgctatatattatacacgac
tatataattatcaatataaaatattagcatgcttttaaaatcaaacaaaacttgacactt
tcaatttgtaagtgaaggtgttgctaaaagttggcacggatttagaatagcacactttgc
aactcggcaacgaaaagtacgagttttaacagctataggtaggaaactcgcaatgtttag
gtctctgtaaacatagaattgcaaacgtgacggaaagcgacgaaaaccgataactatttc
ctccgaatgtgcgacctgtttgcctcttgtgggccaacgtgttgtcggaatgcaaataca
caggtgtttattggtttactagcaaggttgcgcgatgtttgggcttggagtgtttatttg
aatgcgtatatcaggctaccggtcaagtgataaaatttgagcggtttttggaccgcggtt
gttggttgaattatagggaatgcattgaacggatagtgcggtaatcgattcgggtcatgg
taatttgtgttttgtgtgagaacctgccacgatttataggaccgacgcttttcgcaagtg
aacgacaacttaccggaaaattgaaaattgtttcgcttcgcggacgggttaaaataccat
gggagtatagattgctataattagtgtttctgggaattttaggaatcttatgggggcggg
cgtcgtgttcatggaacgccgacgatggtaatcctaaggtgtcgcgatgaggagccgcaa
aggagatcagaaagaacaaagccgcatctaagtgaatagctggcgctggacaatggacga
ctgggagtctagggcgacggataatcgcgaagatgagcggatagttcaaccaaagggttt
tggggaggcggtgtaatttgcgacggccacattgtctcctggatcgcactgcgtggctgt
aaaccagcgattaagtgaacgcgctcgggattacgaacccagctcgatgatcatgtatgt
gttttaacttcgcctgctgtcattgggatcgtgagtttttaacgttcggtgttgggatta
agttcgtggcctatttgacaataatacgcgattcccgtgccataatagtaaaagatcggg
ccaatctgttgaaaagaaattgaatctaaggcaaaaggattttgcttttttacgaacttt
gcgaaaaaaatcaaataacgcgagtgtcgaacccgagaaaagtcgttacgagaatttgag
cattttgaaacataatacaaaaataccaataacacattgctaactccaatatccgccaac
cggctggattatagtcattataccaacttttgtaaagccggtagtaccaattggtcatgc
tcacgagtggataatatcattaagaaggatgacgtggttttaaattatggcggacccaac
gtgctctatagcgacgacacgcggaaagacatttttacatagacgaggcatcaaaaatac
ctcaagttagtttttgagcgtttcttaaattcgtgattggtgaaatacatgcatatattc
tagtattatggaaatctaaaaaaaattcgaattgacaaaaaataacattctcattcatat
agaatagaatatatgtctaaaaatacaaacagcgtttcaaacatgtgcaacactgctgtt
cagttaccgtagttttagaaaagtattactatggataacgttctgcgaatgggcggtaga
atcttttctgattcttcgcaatatcttacgtaaacagggccgaactatacagataatctg
tgggtgtatgttcgttatctgggctgttgttccaacgaaactacggcgaacaatagacga
gcttcattaacgaaacaaaacagcgattacgacttattagcgttgtgcggccgataacga
caaaggcgatccgtggttgttcaatcaaatgttcataacatctgggtaaattagaagcgt
cccgacgaagtacaagtccgcctgcggtctgctaacttaattgacccggtgcaaggcgat
gattaaaagttggatggaactggttcgggtattgttaatttttttggaacgagatcggtt
ttaaggtgcgagacgttcgtggaatttagagttacaccagcactattgagaacgacagct
ggtcaaatgatctaaaagaacgacatctttaaaagtgattttcaaatacaaaagcagcca
actttttgggtctaactcacacatatacatattaacgttcgccaaaaaactcgccattta
cacgaaattttcccgtttttacgaacagcgattttgttacattaatcttaaataggactg
agacaacaacaaacacaaattagatcctaacagtttttgccacattagtgccgtctttca
acagtcttttaggcgcctatgttgttttttgggttcaaacaggtttgtgggaacagtgga
aatgggtcgtatatcagacccttcagaacacagtcttgtggagaattcgtgcacacttg

Reference(s)

Ogura et al. (2016). Developmental Control of Cell-Cycle Compensation Provides a Switch for Patterned Mitosis at the Onset of Chordate Neurulation. Dev. Cell 37(2):148-61

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