Login
Help

CIS-REGULATION

Submit your Data

  1. Transcript 'KH2012:KH.C14.231.v2...' > 
  2. Transcript 'KH2012:KH.C14.231.v5...' > 
  3. Clone 'AHC0AAA204YG07' > 
  4. Transcript 'Harore.CG.MTP2014.S1...' > 
  5. Region 'REG00001159'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.C5:4201966-4204263.Deleted_4204077-4203951

Short name

Ci-cdc25(-2295/+3)_deletionCRM1,2

Region ID

REG00001159

Status

Curated

Origin

engineered region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Yosuke Ogura ()

Annotator

Marion Gueroult-Bellone (2017-02-17)

Curator

Delphine Dauga (2017-05-24)

View position in WashU

Description

The cis-regulatory modules CRM1 and CRM2 (as defined by Ogura and Sasakura, 2016) were deleted. Region called -2295 Delta 1984-2109 in the article.

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2012.C5:4201966-4204263 by deletion

Regulated gene(s)

KH2012:KH.C5.12 (CDC25A; CDC25B; CDC25C)

Construct(s) made to test this region

CONS00001133: pSP.Cirobu.REG.KH2012.C5:4201966-4204263.Deleted_4204077-4203951:prCirobu.bpForkhead>Kaede

Show in situ data
Overview of functional TF binding sites in this region

4,201,9664,204,263

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,201,966 / 4,204,263] on scaffold KhC5

2.3kpb region located upstream the start codon of cdc25 (KH5.12). Cis-regulatory modules CRM1 and CRM2 (as defined by Ogura and Sasakura, 2016) are missing.

Show sequence

Length: 2,298

catattaaagacaggtgctgaagattgaccacaagtgtataacacccgctagcttacaac
agagtaagctctcaagataccgtatgtctaaaacgcaattagctacttcggatgtcaaat
aacctgaaattctgcaaaagaaaacagtttgcttactcgatcggcgaagatactctgcta
atccacgagatatcggcttatgacaaacgcccataagttacatcgccgatatgacccaat
tccatcggcaatacgaccactatgttattgcggtctttactaagtcataatccaacttta
taacgcttgcgtcgcagaacaactgttgcaataagctccaatggccacaccatatgttac
gctcgaggtataggaggccttttgagtatatacccgacattctaatactactcactcaat
ataatacacaatacaacgtatgtatgtatgctgcatggtactctcttaatcaacacaata
aaatgacatatccaaaaccccaataatactatagccagctaactagtatacgactcttag
attctagttattgtgcaatgaaccgtctagtatcgtcagttaaacaaccatgtaatagca
tagtctctttctctcagtgctcgaggagcattccactttagttttaacgcactacaaact
actatacatacgcaatttctttcagttaccaatacgctatagtcgctatataacgtggta
gcctcacgctacagttatgtgctttagatgtgaatacatccgcctgtcgatactggccac
ttgtcctatatacattggatacggcttatcggcacaaagtaaacaataacaatgcgtagt
atgtggtctgcaatgcgctgctctgggtatactggaacggtactacattgttgtacagta
atgataaagttttacgtagaccagtaactacctagaggtagctgaataggtgaatactgt
ttgactcttatgcttctgtctagtaatatataagagccgaagtctgtctcgctgcttaat
acgcgctcaaactgaaatcccaggcaagatgtctacgattaggaagttgagaaaaaaggc
ccaagagctatgagctaattcccttgcattgtccggtttggacgctaattgatattctga
aggcagctcatgtaaactggtttacgaagcatcttacaatccggccaagctgggacacag
cgtgcgagtgactacctttacctgtgacgcgattaccaagcgagagattaacctttttcc
tttggcggtgagtcgaaaaggaaacataccgctgggctctcgctcggtagcgagtttgct
gctggcaagtaaatcctacgaccaacaatactagcgcaccttggcccggctggatgcagt
caggatgtctcggttggctgtttgtacgctatgcgggcactatggatgcacgcaagtgga
ttaacgggtgggattcttgcttaatatatccgaagttgggaactagttacggattaggca
gcgagtcggttctaatttttatagaaaagtttgctccgcggagatatttacgagaagcac
cacatatatattgacgacgtatttttgcttactactactgtcctactaacgttgcacgaa
aaacacacaactagtcttcctttaactatgcaggcagaacatgagtgaatactagattag
ttttaattaacgaatcggtcactatcctgcactgttgcatattctccaattacatggaat
attgctaataatgcatgtataccgaatcgatctactaacaaattgaactcagctggttgt
gcgctgcatgtgcagttgaatgaatggtgccctgcatcgaaccgcagctgctattttaag
agtgctggtgcagtcgcctttttctcgctttactacaggttcagtgtgttttggtcgtcc
actgataagtagcgaaggccgaagcgtcgcggttcgggccccgaggcacgcactattcta
gcgtcat-----------------------------------------------------
------------------------------------------------------------
-------------tgtatatgctgaacagtaaaatacaagagcagaaccacggcgacaga
tttctgccacttaaagaaaacttgatatttttttaagactctcactgcagtaaaacatat
gtcgcccaactgccaacgccacctacttaacatcagcgctaaccaaagggcggtaagacc
gttacagcacgtcggaat

Reference(s)

Ogura et al. (2016). Developmental Control of Cell-Cycle Compensation Provides a Switch for Patterned Mitosis at the Onset of Chordate Neurulation. Dev. Cell 37(2):148-61

Back to Top