- Region 'REG00001279' >
- Clone 'cien52489' >
- Transcript 'Haaura.CG.MTP2014.S8...' >
- Region 'REG00001204'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.L57:96056-98200|FoxC
Short name
FoxC 2kb upstream
Region ID
REG00001204
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Eileen Wagner (2017-05-06)
Annotator
Marion Gueroult-Bellone (2017-05-06)
Curator
Delphine Dauga (2017-06-12)
96,05698,200
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [96,056 / 98,200] on scaffold KhL57
2 kb FoxC enhancer located upstream of the FoxC coding sequence. It recapitulates the native expression pattern of FoxC in gastrula stage embryos.
Show sequence
Length: 2,145
cgactttcaggccgcctacgtagggtaaataccgctcagggcgcgtacgttgcacacagc
gggaaatgacaaagaaatggataaaaagatgcatggttttctaaattgtccggcatacag
aaaacattcccctgcaaagttatatacgtggtaactcgtaagtgggaatgcggtgttata
aaacaaaacacccatgttataacgaccgtcgttttctcggcacttgataataaataaatc
gcattcattcaattaataatagatagccagcagcacgcgtatgttatttgagcaatcgct
tgcaagaggcacgtccgggaagtccacaccttctacctgaaacgtctactttgacgttat
gaacccgtgcaccgaaaagtgttagcgaaaccaagatggttaaactggaatagcttcctc
aacacccacgtacactctttccttttgcgtcaagcggggtttcctttccctctagaagtg
ttgatataaatccttcatgacaccggacaccgcattaagcgcggttcaatcagaatatct
atgcggcacccgcttcatgtagtaggccgggggaagatgggacacctttagcacataata
cccaaacaacctaatcgtattttaaacagttaacaacggtctatggaagtcgtgaggata
cggtttaataattctttaaatatttcttgtttactaccaaatgagacgagaaaatagaat
aaaaaagtgtcccatctccccccaccctactgtataaaccagaaaaagtggaaatgtccg
aaaagagttttatcagcattttagtattttggcgatttaagctttagatacacaaggtgt
tagtaattgcggaaaggtgttttgttcagttaatctgacgaaaggagttggtttatattt
ttatttctaccaatatatatatattgctaccaggatttagtaaaaagcgttttatagtta
atttaaaagtaaatattttaaacagtaagcaacaaatctgtacgattaattgctccgtaa
acgtttactgcatgttcggttaaataaccacctcgcttttcatttttcaatcctactcgt
taacgtcgttttgctaattccctttacttttttcaaggccaagttagttactataccaaa
cgcaatataacataacttaaactgttgtttagctatttaaatacagaaacaaaaataaga
ttaattgaaatagcaaaccaagagaatcagcaacaaaactacacttgttaaaaatacgct
atgaaggtaaaaaaaaactaagtaaaaatgtccaatatatttaataaaacgaagctatgg
tgggtggggaaaccttaagctaaatgctccaggaaaatatgaatcatcgacgcctaagtt
gccgccttagttgcataactcattgtatagcgagtcacggaaaatgctgcgcgtgtaaat
ttccgcatggtgtcgctgctgagccaaccggtctcgctcgtttcaaaaagtcgagtttta
ccgcaaaaaactcttcggttacatctcttatttataaacagcaacccgaggagtcacgct
gtaaactgatcgggtcgtgacaaggttcggacaggagaggcagcttcagttataaccgct
gaatatcaacggtgaacgttaaccgccatttttaatgaacgttggagttaaaaagttcca
agattgagagattaatttaaaagttgtggtttatataaacagggctattgggtaaggctc
catagtgagcggtgtcagcaggtgtttcgtaaggcggcgcgtgccaagttctctacttag
agcttgtcaaaacacgatctaattactgcatcattagcgcgccattgttcctcgcgaaag
ttgattgggattatgacgctcctgctttccattgtttaaggggaagatgaactttttacc
ttcgctcaggctcgactcggtcgtgggcaggtaccggcagaaaacattcgattattgaca
cgaaggcagtgcgagtgttgtgagggaagtcgtttcggagcgacgtttgtttgcttgcag
cgttggcgttcagattctaacttttatatatctcgggcagtgttagtgtaagttaagtta
cgttgaacacaggacaccgaatccttggtttgattctctataatg
