- Clone 'cien46188' >
- Clone 'cien131724' >
- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Region 'REG00001339' >
- Region 'REG00001287'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.L13:48441-48871|KH.L13.2
Short name
KH.L13.2_CRM9_431pb
Region ID
REG00001287
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
no_output
Author
Diana S. José-Edwards (2018-03-01)
Annotator
Marion Gueroult-Bellone (2018-03-01)
Curator
Marion Gueroult-Bellone (2018-03-01)
This 431pb sequence, located in the upstream region of KH.L13.2, has no enhancer activity in the notochord.
Modification of Cirobu.REG.KH2012.L13:46690-48871|KH.L13.2 by deletion
- Cirobu.REG.KH2012.L13:46690-48871|KH.L13.2 REG00001285 [ regulatory_region (complex_region) ]
- Cirobu.REG.KH2012.L13:46690-48440|KH.L13.2 REG00001286 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.L13:48441-48871|KH.L13.2 REG00001287 [ no_output ]
48,44148,871
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [48,441 / 48,871] on scaffold KhL13
Sequence obtained thanks to figure S3.e of the article.
Show sequence
Length: 431
aggtcctgtttccgggcccggggttgtttgtgatcgtttgtggcccaccagaaaccaaac
aagccgttgtacaaatttgcccaagtttggaaatgcacggtattttttcgcgacctcttt
accaaatatactttggcgacctcgcgattacatcttgcttccaaaatgcgcgcgcaatta
cgcgatgaaatcactcgaaacaatagatgtgattgtgtcgttgcagtcgccgtcgctggt
aacgcacgtccgcaaacagctcggtaaaaactaacttactccgcctggatacgggcgcca
atgtctggcggaattctgtcacttttccggtctcaaatgattcaacgtctagcctgaact
tcaacggcttgctgcagtgtttcacgcgaataagatcagacttttgacctacagcgagag
gtgggtgaact
