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  1. Region 'REG00001332'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.C10:2816491-2816634|Ubp4,Ubp8,Ubp11

Short name

n/a

Region ID

REG00001332

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

no_output

Author

Diana S. José-Edwards (2018-05-08)

Annotator

Marion Gueroult-Bellone (2018-05-08)

Curator

Marion Gueroult-Bellone (2018-05-08)


Description

This 147bp sequence, located in the downstream region of KH.C10.320, drives no reporter gene expression in notochord. It contains 1 E-box and 1 Brachyury putative binding sites. Compared to the larger active 198bp enhancer, it lacks one E-box binding site.

Overview of functional TF binding sites in this region

2,816,4912,816,634

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 T-Box n/a gtgtcta [2,816,571 / 2,816,578] This Brachyury binding site is located in the notochord enhancer of C10.320.
2 bHLH n/a cagttg [2,816,618 / 2,816,624] This is one of the 2 E-box binding sites located in the notochord enhancer of C10.320.

Sequence

Aniseed Coordinates: [2,816,491 / 2,816,634] on scaffold KhC10

This sequence was retrieved using ANISEED Blast tool, thanks to the information provided in FigS1.b and TableS5 of Jose-Edwards et al. 2015.

Show sequence

Length: 144


tctcgttttagaggcagcgcttttttcttgcgcaacgaaactgtttgacagcctgttgga
gcctagttagttttcgccgtgtgtctagtcaccacagtgctgtttagttcaagtaagttt
aagtaagcagttgacgtttaagta





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