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- Region 'REG00001388'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.S698:15840-16399|ARL5A/B/C
Short name
n/a
Region ID
REG00001388
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Diana S. José-Edwards (2018-05-24)
Annotator
Marion Gueroult-Bellone (2018-05-24)
Curator
Marion Gueroult-Bellone (2018-05-24)
This 559bp sequence, located in the last intron of S698.3, drives reporter gene expression in notochord, central nervous system and mesenchyme. It contains 4 Brachyury, 1 Fox, 1 E-box, and 4 Myb3 putative binding sites.
15,84016,399
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [15,840 / 16,399] on scaffold KhS698
This sequence was retrieved using ANISEED Blast tool, thanks to the information provided in FigS4.g and TableS4 of Jose-Edwards et al. 2015.
Show sequence
Length: 560
agtaggaaaccgatttaagtctatcgtgcaaccagtgtaatcaattcctggactccatct
gcaacactacttgtgtcgtgaacttggtctgaaacgaatctcacatggacttctgacttc
aacttgcgacacattgccaccagatgacaaaaaagggttctttaaggcaacttcgtgccc
aacaacacagaatttataacagttacatcgtatctttacgtgattaaatatatttttagg
tgaaatattgttaacaattcgttacaacacctaggagcattatattctaaaatagttttt
tattatttaagagtaaaagatagtgaaataaaattacaacaatcatttaacatactttta
aagaaaggcgtttggtcaaacaatgcaagtaaactataaaatatatggcaatgactcaaa
gactttgtacccattttaaacgactaaatcctacagttctccctatgccattcagtaggc
taacatttattaaaactccttgggccagctgaaaccacaagccactttacagttgttgtt
atcttccagtttgcgtcagc
