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CIS-REGULATION

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  1. Transcript 'Phfumi.CG.MTP2014.S4...' > 
  2. Transcript 'Moocci.CG.ELv1_2.S53...' > 
  3. Transcript 'Boleac.CG.SB_v3.S570...' > 
  4. Transcript 'Moocci.CG.ELv1_2.S49...' > 
  5. Region 'REG00001274'

Cis-regulatory Region

Name

Moocci.REG.ELv1_2.S456097:80666-80915|FoxF

Short name

Moocci FoxF basal promoter

Region ID

REG00001274

Status

Curated

Origin

natural region from M.occidentalis

Type of Activity

regulatory_region
(RNApol_II_core_promoter)

Author

Alberto Stolfi (2017-11-22)

Annotator

Marion Gueroult-Bellone (2017-11-22)

Curator

Marion Gueroult-Bellone (2017-11-22)

View position in WashU

Description

The larger sequence contains both enhancer and basal promoter.

Hierarchy of Regulatory Regions

Regulated gene(s)

Moocci.CG.ELv1_2.S456097.g14882 (FOXF1; FOXF2; FOXL1)

Construct(s) made to test this region
n/a
Overview of functional TF binding sites in this region

80,66680,915

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [80,666 / 80,915] on scaffold S456097

250pb basal promoter of FoxF. Contains the TSS. Sequence given by the authors.

Show sequence

Length: 250

GCAGTCTTATAAGTTCCGCTACAACAGTAATACGGAAACTATAAAAATCAAAGTAGTTAG
ATAAATATTCTATACGCAACTTTTAATTTTAATAATATTTATTTAATTCTTTTGTTATTT
TAAAAAAAGTTCAACTATATATAAAGAGTTATAAATATTAATATCATTACTTACAATTTT
TACTAAATCAACCAACAAGCTTCAGAAAGAAAAGAGTTTTAATATTTCAATGATTGAAAT
GGACGGAAAT

Reference(s)

Stolfi et al. (2014). Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians. Elife 3():e03728

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