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- Region 'REG00001506'
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Cis-regulatory Region
Name
Cirobu.REG.KH2012.C1:9629183-9634270|ASIC
Short name
ciASICb 5kb upstream exon1
Region ID
REG00001506
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
9,629,1839,634,270
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [9,629,183 / 9,634,270] on scaffold KhC1
This 5kb cis-regulatory module drives ASICb isoform (KH.C1.215) expression in the sensory vesicle and visceral ganglion in the trunk and in bipolar neurons of the tail. Author's comment : Cloning of the promoter/enhancer region of CiASIC : a 5-kb fragment upstream of the first exon of CiASIC(promoter/enhancer of CiASICb) was amplified with GCGTTCCGACCTCCGTTGTCGTGTCG (sense) and GCATTGTGACCTGTGATGACGTAACGC (reverse).
Show sequence
Length: 5,088
GCATTGTGACCTGTGATGACGTAACGCTTAGTGACGTCACACGACTACAAAACCTACTTT
TACTAAGAACAGTGTTTTACTTATTTAGTACTGTGGAGTAAGATTGATACTGTTAGCACG
TAGATTTTCCCAGATTTCCGTGTTTTTACCAATTAACAACGCTATTATAAGAGTCGTGGG
GATACGGTTTTATAAATCTGTCAATAAACCTAAAATTTTATCAAATGGGGCTATAAAAGA
CAGTGAAAACATAGACCATCTTACTCTAATCTACTAATGCCTACAGTTGCATCGGGTCTC
TATATTAAAGCAATCGATATGCGAGATCTATATACGAAGACAGGATAAATAGAAATGAAT
GAACGTGGTGTTAATTATGTTATAGAAGAGTTATATTGGATACTGGCAATATATACCTTT
GGTGGATCATATTCACTGTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGTAACATACATGGAGACTCGTAAGCTGGCACGAGGTGTTAAACCCGT
GTGATGACGACTGTCGTTTTCCGGCCACGCGAGGATAAAGTAAGTTACATTCTTCTTCTT
CATTCTTACCCACAAAGTAACATACATGGTAACTGGTAAGCTGGCACGAGGTGTTAAACC
CGTGTGATAACGACTGTCGTTTTCCGGCCACGCGAGGATAAAGTAAGTTACATTCATTCA
TTCATTCATAGGAGTCGTGAGGATACGGTTTTATAAATCTGGGAATAAAACTTATCAAAT
AAGGCGATAAAAGACAGTGAAAACATAGACCATCTTACTCTAATCTACTAATACCTACAG
TTGCATGGGGTCTCTATATTAAAGCAATCGATATGCGAGATCTATATACGAAGACAGGAT
AATTAGAAATGAATGAACGTGGGTGTTAAATTATGTTATAGAAGAGCTATATTGGAATAC
TGGCAAATATATACACTTTGGGTGGATCATATTCACTGTCGAGTTTTTATACACATTAAG
CTCACTGTCGAATTAAAACATATAGGAAACTTTTTATATTACACTATAGGAGTATAGGCA
CACATTGTGTAGTCATACACCTCATGCTCACTGTTGAATTATAACATTGGTGTCTTCTTA
TACACCAGACACACATAGTGTATTTATACACCTTATGCTCACTGTCAAGTTATAACAGAA
GTGTCTTCTTATACACCAGACACACATGGTGTGTTCACACATCTCATGCTCACTGTTGAA
TTATAACATTGTTGTCTTCTTATACACTAGGCAGACATAATGTATTCGTATGTTTTGCAC
ATGACCCTATAATCTAACGGTTCAATGATAGTTAATGTTAAAAAAGCTGATGTTCATTGG
CATAAAATAAATAAACCGCATTTTAAACTATAACATGTTAATATAATCACTTGAATAATA
GTTTCAATATATAAACTAATCGATTCTATTTATAAATTATCTCATGGGACGTCATAACGA
TATAAAAGCGCTTTAAAATTTAAATTTTTATCTCGCAAAAATTATTGAGAATATTTATAC
TGAATCTAAATTGCTTTACGAAATCGCATGAATAATAATACGGTGGAGGAAGAAATGAAA
AAATGAATATATGAATGAGGTAATAAAATGAGATATAAATGATTAAAAAGGTAAGTGAAT
GAATAAATGAATGTATAATAGGGTGGGGGGAGATATGGGACACCTTTTCATTCTATTTTC
TCTTCCAATTTGGTAGTAAGCAAAAAACATTCGAAGAATTATAAAACCGTAACCTTACGA
CTTCCATAGACTGTTGGTAATTGTTTAAAACACGATCAAGATATTGGGATATTATGTGCT
AAACGTGTCCCATCATCCCCCACCCTAATATAACTTATATTTACCTAGGTAACTTGTATA
AAAACACAGAGGACATTTATTGTTTTTAGACATCAATACTTCAAAACATACATAAACTCT
TAAAGAGCCTAAAACCTAAAACTAAATATTGTAGGCTGGGTTGGATGGGTTAAGGGGTGA
CACAGTTAGAGGGTAAAATTCTGCTACCATTCTGAGCGTGTGTGTCCTTGGGCAAGACAC
TTTTACGGTGAATATGCATATTATGTGTGCAAGGTCAAAGAACTGTTACCGTTACAAGGA
ACTACATTAAATAAACTTGTTGTTCGATTACAAATATCAAAGGTTGTGTATAGTTGGGGA
AGATGGGCCACCTTTTTCTTTTATTTTATCGTCCCTATTTGGTAATCAACAAAGAACATT
CAAAGAATTATAAAACCATATTCTCTGTTTAAAACACGATCGGGTTAGTTGGGCATTATA
TGAGCTAAAGTTGTTCCGTCTTTCCACACCATTAAACAATATGCAAAGGAATAGAAATTG
CCAGCAAAACAACAATCGTTAACAAGCAAAGTTAAAATAAACGAAAACACTTTTAGTTAC
AAATCTAGTTCAAATTTTCTCTCCAAGTAATATAACACACAAAAGGCGCGAACACCAACC
ATATGGACCTCACAAATTAATTTTAATCGATTGATAATTCGTCACGCCTCGGTCGCCTTC
GCGCTGACCAAGTTTAAAAATTTTCATGATCTGGATTGGCGGGGCAGAAAAACAACATGC
GGAGCCACTGATCTAGTATTACTTAGAAAATCGCAAATCGTATACGCTTTACTTAGTTTT
GTTGCAACTCTGGCATGGAATTAGTTTAACGCATGCTCTGTATTGTAGGGTCAAGGTCAA
TGTAGCCTACAGTACAGAACCTATATTCTTGTAACGTAGCGTTATACGTTATTTTGTAGT
ACCTTTAAATAGCGGTATGCGATGCGATACATTGCTTCATTTACCATTTATTAGAAAACA
AACACGATTAAGAAATATAGAATATTATATGCTAACGGAATCCATCTTACCCCACAGTAT
AATATTCAAAAGTAACTTCTACAGCGACCAATAGCGTAAGCATTCTACCTATTTAAAGAT
CCAACGTAACCTGACATCCATATATATATATATACCTAACAACTTAACACATGATTTTAT
CAATATAATACAGATTGTATATAGTTTTGGACCAAATATTGTTACGTATATTGCCCTATT
GTACAGGCAGACAATATGTATGGCAGATATAGGGTAAGCGAAACCTTTAACATAACTTGA
CTGCATTTAGAGTAAGACAAAATTAAGAACACTCATTCATTCTCTTTTCAATCACATTTG
TTAATAAACAACAACATATTTAATTAAATAACCGACAACAAAAAGCGTTGTAAATTGTTA
AAAACACGACCGGGGAACATGGAAGATATATGGGCTGACGGTATACCATCTTACCCCACT
GTACTATATACATAATGTGTTAGACCTGGAACAGTTATAAAGCTTCAATGAGCCGTTCTC
CTTACATCGCATATTCCTAACTTTACTGCTGTTTCATGACCAAAAACCCAGGTGAACACA
TAGGGTTACATACGTGGTAACTCGTAAGCGGCACGAGGTGTATGAAACAGAACACCCGTG
TTATAACGACTGGTGTTGCCCCGCCATGCGGGAATAAACAAGATGCATTCATTTATTCAC
TTCGTTCTACTATAAAACCATGGTACACGGATATGACGTCAGTATGCTTCTATAATACAC
ACTTAGTTCTACTGTAATAAAATAAATATCAGTATCAAGTCAGACCAATACATGCTTTCA
TTCTAACGCCCTAACCTGCCGCCCTTACTTAAAACTTATCCACACTACTAACCACGCAGA
GTTTACAAGTGTCGAGTCCAAACCGGCAGATTATATTTTGGCGCTTTGAAATAGTAATCA
ATATGGAACGAGTTCTGCATTGCCTCGCGCTTCACAATTGTCGAGTAATGATTACACTGC
GCCCAATAATTGTTCGCAACAAGGTCTCAAGAATCGAACTTTTTGGCCTCACAGCTTGCC
CTGATTCCCCGCGCTTGCCTAATGAAATCCCGACTGTCAAATTAAACAGAAGCGGACATG
TAATTAACTCTGCTATATTGTGACGCTGCAACCTGTCCTTTGTGACGCGTACGCCTCATC
ATGGTACGTCACAAAATCGTTAGCGGACCAGACTTTATCCCTTGAGACCTCAAGCTCCCA
CCGAGCTGCGCTACAGGGTTGAAATAATTTTGCCGCTTATCCTCATAAATTATTCACCGA
TATTGAATCCCTGGGTACGTTATGCCTGCACAAAAGTCACTCCACCAGCAACCCAAATAA
TCCTAACATGCTTGTTTGGGGATTAAGAAACATCCAAACTAAGCCAAACGAGCAAGCCAA
CAAAATGGGATTTTCAGCCAAACGTAAAACACAAAACCACCGAAGTGCAATTCACTGTCG
TTCGCCCAAAACAAGTCTAAGCTATGCAATCTAACTTCGCCTTTTCTTATCTTATTACAT
CGAACCGGATAACGCAATCTCAGACGTTCAAATGCGCCACTGAAACGTTTTTTCTTTCGC
CAAACTTTAAATACAAGCAAAACTCCCCGCACTTACCGCAAGCCCATAACTTAGTGCACG
TTTTGATATTCTAGTAATAACTAAAACACCGTCTTCATATGACTTGTTTTGAATAAACGT
AACTTGCTCATCCTCGCGTGGCGTGGCGACGACAGTCGTTATAAAATGAGTGTTCCGTTA
CGAAGACCTCATGCCCACTTACGAGATAACAATTTGCAATTTTGTGCGTGATTGTTTTTT
TATATTAATATCATTTTTGTGCAACATTAGTGGCCAGATCACACATGTCCCCAAAGGTGG
CGCCGAGCCTCGAATGCCGGATACTTTGGTTACAAAGCGAACAAGATATATAGTAGTGTG
GGAAAAGATGGGACACCTTTCGTTCTATTTTCTCGTCCCATTTGGTAGTAAACAAAAAAC
ATTCAAAGAATTATAAAACCGTACACTCCGGACTCGCATGGACCGTTGTTAATTGTTTAA
AACACATTTAAGACATTTGGGTAATATGTGCTAAGGTGTTCCGTCTTCCTTCACCCTATA
CTGGCCTACTATATAATACAAACGACACGACAACGGAGGTCGGAACGC
