- Region 'REG00001512'
Cis-regulatory Region
Name
Cirobu.REG.KhC8:322246-320594|tyrp1/2b
Short name
tyrp1/2b 1.6kb upstream of TSS (Esposito 2012)
Region ID
REG00001512
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
322,246323,898
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [322,246 / 323,898] on scaffold KhC8
The 1.6 kb region upstream of tyrp (KhC12.469) behaves like a specific enhancer, able to drive reporter gene expression in ocellus and otolith precursors cells from neurula stage. Approximately 1.5 kb of the Ci-tyrp1/2b 5′ flanking region was PCR-amplified from genomic DNA using the primers: Ci-ptyrp1/2bF (GTAGTATAAACAAACTACCGATAACCTGC) and Ci-ptyrp1/2bR (AGAACGAAGAAATAGATGTATGCTTGG).
Show sequence
Length: 1,653
AGAACGAAGAAATAGATGTATGCTTGGTTTCGCTAAGTGTTTTTATACTAATGTGGCAAC
TTGGAAAAAAGGCATCAAAGTATCACGTGAATAAGCTTCTCAAAAGTTAGCCTTCAGCTT
CCTGTATTAAACTCGTACAAGGGCGATTAATTTATCTATGCATTATTAGGTTCGCTGCTT
GGCCGTATCGTCAGGATTTAAGAAGCAGGACGTGACTCGTGATTTATGAAATGGATTAGC
ATTTATTATAATCTTCGCATACGTTTTCAATATGTGTTGGACGAAGTCAAATTAACTCTC
AACAAAGTAATGTTCCATGATTAAGCAGAGTCCGTATATCCCGGCTCTGCTATTAAGCTA
ACATTATATCGTATTTTTTTGCTATTTTTCAATACATTCACGTTCAAAACATTTTTTAAA
CATGCAAACCAATACTATAAATATGCGGATGATCCGTACATTAGTTGGTATTTTTGTTTA
AGACTTTAAGTTATCATATAAATAGAATTTAAACGGTCTGTGCCAAATAATTTATTGAGC
ATGGTAGTGGTCATATAGATCCATTTTCGCCGAACAGTTGTTCTTGTTGTTTTTTTGGAC
GACTTTTTTCCGCACTTACCTCAATTTTTAATTCTAGCATTTATTCTTTAATCTCTTGAT
TGAAATCAAATCATATTATATTTTTATAATTTTTAGACTACATTTTCAGATTTAAAACCA
CATAATTAGCGCGTGTGCACCGAAGCGTTGACAAGTGCCTTTTTCATATCGTTATCTTCG
GTATAAACACCGCGTCTCTCGTTTCTTCGCTCTTTTAGTTTAGCGCTCGCAATAAATCAT
TATGCAGTCGCCACAATATGAATAATATTAACTTCTAACATTACCTATAATACTGCGTGA
TTACGGTTTATCTAAATTCACAAAAACAAACGTCTTTAAGCGACGACAAGGTTAACTAGT
GTAAGTTTACTTGTCAACACATGGTACAGGAGTTGTTCAAAGCGTATTTACACATATTCT
TTACCAAACTTTCAAGCCTTATACGTATTAAGTTTAATGAGTTATAATACACGAATAAAT
GCATTCTATCTACTGCTGCTCCACAGTCACCAATGGCGACTAGAACCCGCTTTGTTGGTT
ACTTTTGATTTGTTTTTGATCGATCTCAGTCGACCGTTGTAGTAATAGGGTTAATTAATA
CAATGCTGATCAGTTTATACCGTGCTCACGCATTAGATATGTGATCTCTTGTGATTATAT
GACTATGCTATGAGGTTTCTATGTCTATGTTGATAATGGCGCCGCGTTCTTCCCTTATTA
GTAACATGACTTGGCAGCAACATTTCTGAAACTACGGAGAAGCGAGCGAGCCAGAACGAG
TTTTGAAACTGCTTTGTATAATTCTGTAAACGTGTTAAAAATATTGTAAAGCCAAAATCA
ACTCTGACGGTACTGTTGTTTTTATAAACTTCTAAGGTTTTCTGATGGTAATTACTAGTT
CCTGTATATGGTATGATCGTCTTAATAAGTTCAGTCATTGGTGGCTTGTGCCACGTATTT
TTGAACTTTAAGTCCTATAATTATTTCAAAGCATCTATTTGCCCTGTTTATTCAAATATT
AAACGCAGGTTATCGGTAGTTTGTTTATACTAC
