- Transcript 'Moocul.CG.ELv1_2.S10...' >
- EST 'AV986493' >
- Transcript 'Cisavi.CG.ENS81.R5.5...' >
- Transcript 'KH2012:KH.C10.402.v1...' >
- Region 'REG00001516'
Cis-regulatory Region
Name
Cirobu.REG.KhC11:4100254-4102604|Vsx
Short name
Vsx (Stolfi and Levine 2011)
Region ID
REG00001516
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Alberto Stolfi (2020-11-21)
Annotator
Marion Gueroult-Bellone (2020-11-21)
Curator
Marion Gueroult-Bellone (2020-11-21)
4,100,2544,102,604
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,100,254 / 4,102,604] on scaffold KhC11
This 2.3kb regulatory sequence is spans from the 2nd intron to the downstream intergenic region of Vsx. It was amplified using the following primers : Vsx exons/introns F, GGTTCAAATCGGATGAAAC; Vsx exons/introns R, ATTCTTCCTTCGAGCATTGAC;
Show sequence
Length: 2,351
ATTCTTCCTTCGAGCATTGACTTTGCTGTGACTCATGAGTAACTTTTGATTGAACAGTTT
TCTTGTGCATGCCTACAATACAATATAACGTAATTAAGCACCGTGTTACACGTTCACCAG
TAATCTATAATCGGTTTACGCCTTACCAATAAGCCAGGGTGCAAATGCATCGTTTTTGAG
ACCGTCCTTGTAACAGGCATTAATAACAGTATCGGGTAGAGGTATAGAATGGCGAACCAT
TGCACCGTACAAGCCGTATTCTGCCATAACGCTACTCTTGCCCCAACAATTCTCTCGTTT
CCGCCATTTTGCGCGGCGGTTCTGAAACCAAACCTGAAGGGAAAGAAATCATGTTCGTTA
AAATAGATAATGAATTTAAACAGAATTGGTCCAACATTTAGAAATACAGAGTTAACCCAG
AAAGAAGTAAAGGTCTCACCTATAATGGTGTAACTAATTTAATCGCGTCAGTTTAATCGA
GCTTGGTACCCACTGGGAATAAGCGACAACCAATGTTACCATAATTATGTACGTAGATCG
CAGATTAAAAAGTGATTCCACACATGTGTGGTCGATAATTAATTCGAAGCCAACAGCGAT
TGAACCAATAGATAAATTGCTTTAATCAATTCAATGACTGACTTTACGTTTACGGCCTAT
TATTTCAAATCAATAACCAAGGAACGAAAATGACAAACAGGCTGTAATTTGGATGGCTTT
CGTAAATTTAAACAATCAACACTGCTGTTGTTTTTTAAACCAAAGTAGGCCCTATAGTAT
AGGATAGGCCCTATACAGTGGGGTAAGGGTAGCGTTATCGCATAATTATGTCTCGTATTT
CCTGAACGGGATTTAAATAACTAACACTAACACTCTGAAGGGTTGTGAAGATTCTGTTAA
TACACTCTATTAAATACTAAATGGGACAATGAAATAAAATGATACGTAGGCCATCTTACC
CCATTCTACTAAACATTTGTTTTTACCTGAATTCTGTCTTCTTGTAAATTTGCGTTTTTC
GCTAATTTTTCTCTCGTTTCTGCATCCGGGTAATGAGCAAGATCAAATGCTTTTTCCAAA
TGTTCAAGTTGAGCGCTTGTGAAAATTGTTCTGCCGCAAATTATAGTACATTAATTAAAA
ATCCTTGATTTAACTACCGACCTCTATACCCCATGGATACCCCATGGATATCTACGTAAG
CATAAATATATACAATATGTAAACCATTAAGGCGGCTTATACCTCCGGGGAAGTAGCAGG
ATCCAAAATCTGGTAGTGTCCATGCGGTATAGCACCTTGGGGGTTATAGAGTAATGGGCC
AATCTTGGCCTAAATCCTAGGACCAATGGCGTGCCACGCTGCCGGGCCCCACCCATACAG
AATAAAATACATCAATATAGCGAGTATAATAAGAAATAGAGAGCATTTGTCGAGAAAGTA
CTTTGTTTAAAACCACACGTTGGGAAAGTTACCTGCTACGTCGTTTCTTTAGTTTATCAC
TGAGTTCCTTACTGTTGTTTCTAGATTGGGTAACTTCTGTAAAAAACGCGTTGCTTTTTT
AATTCAATTCATTTTAAAGATTTTTTAGTTGAAAACTGTAATCATTTGTTAATTTTACGA
ATAAAGGTTTTCATGTGTATTAGTAGATACTAAAGTGTTTTTGTTTTCATTATTACCTAA
ACAGAAGGCAGAGAGTTCGATTAAGAAAACGTTCTGTCATTTGTAAGTGTTACAACATGA
CATTGATACATTGCTAGCGCCGCCATTTTGTTTTCTATTATTCTAAAGCAGCGAAGCGAT
TGGTGAATTAAGCGAATCGTTTCCGATGCACTTATTGTGAGTAGATAATGCCTCTTGTCG
GAGCTATGCGCGTTCTTTTCAAGCGACAGCAGTTGATTCGCCACGAGAGCCGATTGAGCG
AATGAAACTGCGATTAATTTGTTATTAAAGATATCTTCGCAACACAAGCAATTGTGAACG
TCGGTATAAGGAACATATGCCAGACGGTCGCAAATGTAAACGATACAAATTACCGCAGGG
TGCATTGCTCAATGAGGTGAACATGATGGAATCGAGCAAAGCGGGATTAAATTCGGATCA
AAATCTAGCAAATGGAATATGCAAAATATAAATTTTTGCCAACCCCTTTTTCAAATAATG
TAATCCCATGAACAATATTGAACCACAGTTATGTCAAAAATATAAAATGAAGGGCGTTGT
CTATAGATTGTATATTGCAACCACAATAACAGAATATGAAAATAGCAGTAATGCAACAAA
ATTACCTTTTGTACCATCCGAAGAAAGTTTTCGTTTTTTGGCTGCAGGTTCGGTTTCATC
CGATTTGAACC
