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CIS-REGULATION

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  1. Region 'REG00000731'
  2. Region 'REG00000635'
  3. Region 'REG00000571'
  4. Clone 'cihA11D3S'
  5. Region 'REG00001521'

Cis-regulatory Region

Name

Cirobu.REG.KhC1:4530848-4532944|Vacht

Short name

Vacht -1222/+876 (Stolfi 2011)

Region ID

REG00001521

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Alberto Stolfi (2020-11-21)

Annotator

Marion Gueroult-Bellone (2020-11-21)

Curator

Marion Gueroult-Bellone (2020-11-21)


Description

This 2.1kb region spans from -1222bp upstream to 876bp downstream of Vacht transcription start site. It recapitulates Vacht expression.

Overview of functional TF binding sites in this region

4,530,8484,532,944

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,530,848 / 4,532,944] on scaffold KhC1

Show sequence

Length: 2,097

tctacaaacgtccatgatgaacaataaagtagaaacaaatttgctttcaatcaactttat
tttcctttgataaatttctgacccacacaacccgccctcagatgtaatctgcaaaaggca
aaaacaggttgttatgctgagttacatattataaatcatgtatttgccttttgcagatta
agaaagttgggtacctactctacaacactgagctgtcgctttatattgaatttgtgtata
acgaagttggtttttattgttaactgcagttcatcttacctcgacaacagctagatatat
atatatatatatatatatatatttgtattagtacattagataagagtgcaataccgtgct
ttgtgagataacaaatagttgaatataacttgtttctccagagttaaaacaggcacgcgc
tgctgtttacgagcaacatgccatttataaatttccgccgtcttgttgcgctattttatt
taataaacagtcaagtttttcgtcatcaggtcgttggtgttacacacacatcatcagaaa
tagcattgcacttaaaccctttctatgcataattaatacgaaatcgaaagatacgcagaa
gaccggacggcatttgttaacattaacctttcaccgaagtacgttataatgaattgtacc
ctcatgtaatttaaataaaattgacaagtaaaaggacaaaacaaactatttcatgatgaa
gccaatacataaacaccacgccagatttaagatacatgctatcaacttacctgatacaac
tttgtccaacaaaaaaggtatttccaaacaacttgcacgtatttttacaggttaaaatct
ttctattgaatcgtacacctaagttaaattaaaatctgtaaaagccaaacaaattataaa
acaatttaatttgggctatgaaaatatgtcgcatatagtatctaaaaaataactctatat
gaaaattccgaagacttctgcactatatgttcaaattaaacgtacctttaacaaatattt
ttttataaagatcggacaagaaattaaatgggagccgtctcaataccttacctatagaca
tgttaattcaggaaagaatattaacttttcaatccacaattgatcaaattttaggcaatt
gtgagcaagggcccaactgactagaagcgttaaaatcaatgttcattgcgtcactatctc
ctgcacaatggaagggaagcaagagtgattcaacaataggagagtcgatactgctttttt
tctttatgcagattattcacgaaacaaaacataagcctagcgttaaattgaaatgtcagc
caatattaatttcttttatattaaagtattgacatagcaaaacaaacaaataataataag
tggaacacagggcgcctcccaaaaaaatcaaaaaaaagttatgttttacaaaacaacgat
caagaataatttttgattaattcatggctcattttcaatttgccgaaatttaatcgtaat
taagtttaacaacttcaaatttaatcaataaaatatatcggtacagaatgtgtatagtgt
atagtactgtggggtaagatgggacacctttagaacagaatatccaaatatcctgtttta
aacggtctgtaggagtcgcgaggatacggttttataattcttttaatgtttttgtttgct
accaagacgagaaaacagaatgaaaaagtgtcccatctccccctaccctactatattaaa
taacaaaatttaacaattacattaaaaaatacggtacgttttctatgctttaaaaaccaa
aacttatgttttttgatttgttctgattttcagattgcttcatttgtctgaaattaacat
tggctggtttgaaatattgtcttgcctgttccggtgactgttaaatcaatctgctgataa
aaacgcacaactaggacaagtcaccgcaatgggaatgacacaaggtctaaatggttaatt
tcacatattgatttttgcttgatttgattgattccgagtcaaaggatacactaacgcatt
tctttaattaattttgttttgaggcagatgatggtagccaaaggtttacgacgtaat