- Transcript 'KH2012:KH.C10.113.v1...' >
- Clone 'citb031n15' >
- Region 'REG00001588'
Cis-regulatory Region
Name
Cirobu.REG.Kh2012.S544:4637-5236|Dmrt1
Short name
Dmrt1_-486bp (Tokuhiro et al., 2017)
Region ID
REG00001588
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
When compared to the -924bp cis-regulatory element, this -486bp element showed similar activities both in anterior neural cells a6.5 and in vegetal cells.
Modification of Cirobu.REG.Kh2012.S544:4199-5236|Dmrt1 by deletion
- Cirobu.REG.Kh2012.S544:4199-5236|Dmrt1 REG00001587 [ regulatory_region (extended_promoter) ]
4,6375,236
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | Fox |
KH2012:KH.C8.396 |
TGTTTAC | [4,766 / 4,772] | This Fox binding site is located on the Dmrt1 486bp cis-regulatory region. When mutated, this cisReg is active in vegetal cells. |
Aniseed Coordinates: [4,637 / 5,236] on scaffold KhS544
There are two TSS and one putative FoxD binding site in this Dmrt1 cis-regulatory element. The sequence is 600bp long from the first TSS and 486bp long from the second TSS of Dmrt1. This cis-regulatory element is active in anterior neural a6.5 and vegetal cells.
Show sequence
Length: 600
TGTTTTACAGAATCTCAATTTAAAACCCGTCGACAATTATCGGATTTCCGCCGCAGAGTC
ACAGGAAGTTGTTTTGCTTAATAATACTTGTTTTAGATAAGCTGTTATGTTGCTCAATGA
ATAACAATAATGTTTACGTTGGTTGTTGTGGCAATGTACATTGTAACTTCCACAAACCTC
TCAGAGGGCAAACACATTAAGCAAACTGAATTTGCCAAGTACTTCGGGAAGTCACTGATA
AGCGGACAATACGAAGCGATCACAGGGAATTGTCGCACGCCAGAATGTAAACAAAAACAT
CGCCTGTGCACCGCGCGATCGAAGACACACAGCGCTGACTAATTGACCAACACAAAAGCG
AGGAAAGAAAAAAAAGCGAAAACGAGAACGGGATATTAATTGTACACGATTGTGACGTAA
ATTCGAGGCATTTTTTCTTCCGAAATCGAGCGGTTTAAATACCTCGCGTCTTTATTAGGT
ACAATCATATTGCCTTGATACCTTGCTTAGAACAGTGAATACATATAAATCGTATTAAAA
GCTTTAGAGTGTTAAACCAAAGAGTTACAGAAATTATAGCAAACAGTTCGTTTAACTGGC
