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- Region 'REG00001594'
Cis-regulatory Region
Name
REG.CirobuKH.C11:1684423-1684923|TnI
Short name
Ci_Tnl_-836/-335bp (Khare 2011)
Region ID
REG00001594
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
Author
Stephanie A Izzi (2023-04-13)
Annotator
Marion Gueroult-Bellone (2023-04-13)
Curator
Marion Gueroult-Bellone (2023-04-13)
1,684,4231,684,923
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,684,423 / 1,684,923] on scaffold KhC11
This 500bp cis-regulatory element, located uptream of TnI, is active in the muscle at the tailbud stage. The DNA sequence was provided by Dr. Hastings.
Show sequence
Length: 501
GTAGGTGCTTGTGACGTCATACTGCAGCTGTTATCGCCTGAGCAGCAGTGTTCCCCGTGA
TTTTGTGCTTTGAATCAAATTTAAATATTACAAATATAAAAAATATATTCTGTTATACTT
AATCAAAGTAAAGTATTGGTATAAGCATATTTTCGTTAATTTAGTCCAAATCAACTATAG
TTTAAGCAGTTTCTAGACGTTTACATCAGTACGGCGGCAACACTCGTTCTATATTAAATC
CAGACAACCAGAACTTCTTCTTCGTTTAGTCCCTCGATGTTCTATTTAAGGGAGCTTACA
GCATCCATCCAACATCGGTAATCGAGAATCTGTTAACCTTGTTTAGTCACAGCGAAAGGT
TCATGCATTTAAGAACCCCTTGGTGAATTTAAAGAATTTTCTTGTAGAAAGGGACGCGTA
GTGGCGATAGTTACTATGGTTAACTATTAGCTTAGCTGAGTTTATCATGATTACTATTTT
TATTATTTAGATTTCTGAAGG
